Gene : AT1G25500 A. thaliana TAIR10
Defline:  (1 of 1) PTHR12385:SF36 - PLASMA-MEMBRANE CHOLINE TRANSPORTER-LIKE PROTEIN Genomic Order:  2561
Name:  ? AT1G25500 Secondary Identifier:  ? PAC:19649937
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G25500 0.5kb upstream 0.5kb upstream 3230 true Chr1: 8955249-8958478 Arabidopsis thaliana
AT1G25500 0.5kb upstream 0.5kb upstream 500 false Chr1: 8957979-8958478 Arabidopsis thaliana
AT1G25500 0.5kb downstream 0.5kb downstream 3230 true Chr1: 8954749-8957978 Arabidopsis thaliana
AT1G25500 0.5kb downstream 0.5kb downstream 500 false Chr1: 8954749-8955248 Arabidopsis thaliana
AT1G25500 1.0kb upstream 1.0kb upstream 3730 true Chr1: 8955249-8958978 Arabidopsis thaliana
AT1G25500 1.0kb upstream 1.0kb upstream 1000 false Chr1: 8957979-8958978 Arabidopsis thaliana
AT1G25500 1.0kb downstream 1.0kb downstream 3730 true Chr1: 8954249-8957978 Arabidopsis thaliana
AT1G25500 1.0kb downstream 1.0kb downstream 1000 false Chr1: 8954249-8955248 Arabidopsis thaliana
AT1G25500 2.0kb upstream 2.0kb upstream 4730 true Chr1: 8955249-8959978 Arabidopsis thaliana
AT1G25500 2.0kb upstream 2.0kb upstream 2000 false Chr1: 8957979-8959978 Arabidopsis thaliana
AT1G25500 2.0kb downstream 2.0kb downstream 4730 true Chr1: 8953249-8957978 Arabidopsis thaliana
AT1G25500 2.0kb downstream 2.0kb downstream 2000 false Chr1: 8953249-8955248 Arabidopsis thaliana
AT1G25500 5.0kb upstream 5.0kb upstream 7730 true Chr1: 8955249-8962978 Arabidopsis thaliana
AT1G25500 5.0kb upstream 5.0kb upstream 5000 false Chr1: 8957979-8962978 Arabidopsis thaliana
AT1G25500 5.0kb downstream 5.0kb downstream 7730 true Chr1: 8950249-8957978 Arabidopsis thaliana
AT1G25500 5.0kb downstream 5.0kb downstream 5000 false Chr1: 8950249-8955248 Arabidopsis thaliana
AT1G25500 10.0kb upstream 10.0kb upstream 12730 true Chr1: 8955249-8967978 Arabidopsis thaliana
AT1G25500 10.0kb upstream 10.0kb upstream 10000 false Chr1: 8957979-8967978 Arabidopsis thaliana
AT1G25500 10.0kb downstream 10.0kb downstream 12730 true Chr1: 8945249-8957978 Arabidopsis thaliana
AT1G25500 10.0kb downstream 10.0kb downstream 10000 false Chr1: 8945249-8955248 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372372 5261 Brassicaceae View MSA
123830547 5264 Brassicales-Malvales View MSA
124342538 5266 SBM View MSA
124236825 5268 Malvidae View MSA
124063041 5270 Rosid View MSA
123736673 5271 Pentapetalae View MSA
122792379 5272 Eudicot View MSA
122042832 5273 Angiosperm View MSA
121344178 5274 Embryophyte View MSA
123428325 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.943       Low
cufflinks 2.214        
cufflinks 3.207       High
cufflinks 2.469        
cufflinks 3.141       High
cufflinks 2.064        

0 Strain