Gene : AT1G25054 A. thaliana TAIR10
Defline:  (1 of 5) 3.5.1.108 - UDP-3-O-acyl-N-acetylglucosamine deacetylase / UDP-3-O-acyl-GlcNAc deacetylase Genomic Order:  2515
Name:  ? AT1G25054 Secondary Identifier:  ? PAC:19655781
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana NAGLIPASYN-PWY Arabidopsis thaliana pathologic  

Genomics

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Gene Structure Displayer

Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G25054 0.5kb upstream 0.5kb upstream 8378 true Chr1: 8797983-8806360 Arabidopsis thaliana
AT1G25054 0.5kb upstream 0.5kb upstream 500 false Chr1: 8797983-8798482 Arabidopsis thaliana
AT1G25054 0.5kb downstream 0.5kb downstream 8378 true Chr1: 8798483-8806860 Arabidopsis thaliana
AT1G25054 0.5kb downstream 0.5kb downstream 500 false Chr1: 8806361-8806860 Arabidopsis thaliana
AT1G25054 1.0kb upstream 1.0kb upstream 8878 true Chr1: 8797483-8806360 Arabidopsis thaliana
AT1G25054 1.0kb upstream 1.0kb upstream 1000 false Chr1: 8797483-8798482 Arabidopsis thaliana
AT1G25054 1.0kb downstream 1.0kb downstream 8878 true Chr1: 8798483-8807360 Arabidopsis thaliana
AT1G25054 1.0kb downstream 1.0kb downstream 1000 false Chr1: 8806361-8807360 Arabidopsis thaliana
AT1G25054 2.0kb upstream 2.0kb upstream 9878 true Chr1: 8796483-8806360 Arabidopsis thaliana
AT1G25054 2.0kb upstream 2.0kb upstream 2000 false Chr1: 8796483-8798482 Arabidopsis thaliana
AT1G25054 2.0kb downstream 2.0kb downstream 9878 true Chr1: 8798483-8808360 Arabidopsis thaliana
AT1G25054 2.0kb downstream 2.0kb downstream 2000 false Chr1: 8806361-8808360 Arabidopsis thaliana
AT1G25054 5.0kb upstream 5.0kb upstream 12878 true Chr1: 8793483-8806360 Arabidopsis thaliana
AT1G25054 5.0kb upstream 5.0kb upstream 5000 false Chr1: 8793483-8798482 Arabidopsis thaliana
AT1G25054 5.0kb downstream 5.0kb downstream 12878 true Chr1: 8798483-8811360 Arabidopsis thaliana
AT1G25054 5.0kb downstream 5.0kb downstream 5000 false Chr1: 8806361-8811360 Arabidopsis thaliana
AT1G25054 10.0kb upstream 10.0kb upstream 17878 true Chr1: 8788483-8806360 Arabidopsis thaliana
AT1G25054 10.0kb upstream 10.0kb upstream 10000 false Chr1: 8788483-8798482 Arabidopsis thaliana
AT1G25054 10.0kb downstream 10.0kb downstream 17878 true Chr1: 8798483-8816360 Arabidopsis thaliana
AT1G25054 10.0kb downstream 10.0kb downstream 10000 false Chr1: 8806361-8816360 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365511 5261 Brassicaceae View MSA
123830520 5264 Brassicales-Malvales View MSA
124344354 5266 SBM View MSA
124241167 5268 Malvidae View MSA
124073632 5270 Rosid View MSA
123739136 5271 Pentapetalae View MSA
122793269 5272 Eudicot View MSA
122046520 5273 Angiosperm View MSA
121346728 5274 Embryophyte View MSA
123424011 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.016     Low Low
cufflinks 0.064     Low High
cufflinks 0.023     Low  
cufflinks 0.051     Low  
cufflinks 0.025     Low  
cufflinks 0.039     Low  

0 Strain