Gene : SEP3 A. thaliana TAIR10
Primary Identifier:  ? AT1G24260 Defline:  (1 of 3) PTHR11945//PTHR11945:SF196 - MADS BOX PROTEIN // SUBFAMILY NOT NAMED
Genomic Order:  2462 Name:  ? AT1G24260
Secondary Identifier:  ? PAC:19651403
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G24260 0.5kb upstream 0.5kb upstream 2969 true Chr1: 8593637-8596605 Arabidopsis thaliana
AT1G24260 0.5kb upstream 0.5kb upstream 500 false Chr1: 8596106-8596605 Arabidopsis thaliana
AT1G24260 0.5kb downstream 0.5kb downstream 2969 true Chr1: 8593137-8596105 Arabidopsis thaliana
AT1G24260 0.5kb downstream 0.5kb downstream 500 false Chr1: 8593137-8593636 Arabidopsis thaliana
AT1G24260 1.0kb upstream 1.0kb upstream 3469 true Chr1: 8593637-8597105 Arabidopsis thaliana
AT1G24260 1.0kb upstream 1.0kb upstream 1000 false Chr1: 8596106-8597105 Arabidopsis thaliana
AT1G24260 1.0kb downstream 1.0kb downstream 3469 true Chr1: 8592637-8596105 Arabidopsis thaliana
AT1G24260 1.0kb downstream 1.0kb downstream 1000 false Chr1: 8592637-8593636 Arabidopsis thaliana
AT1G24260 2.0kb upstream 2.0kb upstream 4469 true Chr1: 8593637-8598105 Arabidopsis thaliana
AT1G24260 2.0kb upstream 2.0kb upstream 2000 false Chr1: 8596106-8598105 Arabidopsis thaliana
AT1G24260 2.0kb downstream 2.0kb downstream 4469 true Chr1: 8591637-8596105 Arabidopsis thaliana
AT1G24260 2.0kb downstream 2.0kb downstream 2000 false Chr1: 8591637-8593636 Arabidopsis thaliana
AT1G24260 5.0kb upstream 5.0kb upstream 7469 true Chr1: 8593637-8601105 Arabidopsis thaliana
AT1G24260 5.0kb upstream 5.0kb upstream 5000 false Chr1: 8596106-8601105 Arabidopsis thaliana
AT1G24260 5.0kb downstream 5.0kb downstream 7469 true Chr1: 8588637-8596105 Arabidopsis thaliana
AT1G24260 5.0kb downstream 5.0kb downstream 5000 false Chr1: 8588637-8593636 Arabidopsis thaliana
AT1G24260 10.0kb upstream 10.0kb upstream 12469 true Chr1: 8593637-8606105 Arabidopsis thaliana
AT1G24260 10.0kb upstream 10.0kb upstream 10000 false Chr1: 8596106-8606105 Arabidopsis thaliana
AT1G24260 10.0kb downstream 10.0kb downstream 12469 true Chr1: 8583637-8596105 Arabidopsis thaliana
AT1G24260 10.0kb downstream 10.0kb downstream 10000 false Chr1: 8583637-8593636 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361006 5261 Brassicaceae View MSA
123839919 5264 Brassicales-Malvales View MSA
124340134 5266 SBM View MSA
124252678 5268 Malvidae View MSA
124064049 5270 Rosid View MSA
123750627 5271 Pentapetalae View MSA
122793492 5272 Eudicot View MSA
122049609 5273 Angiosperm View MSA
121350957 5274 Embryophyte View MSA
123424057 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.129     Low High
cufflinks 0.006     Low  
cufflinks 0.039     Low  
cufflinks 0.01     Low  
cufflinks 0.09     Low  
cufflinks 0.006     Low  

0 Strain