Gene : AT1G23960 A. thaliana TAIR10
Defline:  (1 of 19) PTHR31260:SF28 - UPF0725 PROTEIN EMB2204 Genomic Order:  2426
Name:  ? AT1G23960 Secondary Identifier:  ? PAC:19650064
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G23960 0.5kb upstream 0.5kb upstream 2410 true Chr1: 8478407-8480816 Arabidopsis thaliana
AT1G23960 0.5kb upstream 0.5kb upstream 500 false Chr1: 8480317-8480816 Arabidopsis thaliana
AT1G23960 0.5kb downstream 0.5kb downstream 2410 true Chr1: 8477907-8480316 Arabidopsis thaliana
AT1G23960 0.5kb downstream 0.5kb downstream 500 false Chr1: 8477907-8478406 Arabidopsis thaliana
AT1G23960 1.0kb upstream 1.0kb upstream 2910 true Chr1: 8478407-8481316 Arabidopsis thaliana
AT1G23960 1.0kb upstream 1.0kb upstream 1000 false Chr1: 8480317-8481316 Arabidopsis thaliana
AT1G23960 1.0kb downstream 1.0kb downstream 2910 true Chr1: 8477407-8480316 Arabidopsis thaliana
AT1G23960 1.0kb downstream 1.0kb downstream 1000 false Chr1: 8477407-8478406 Arabidopsis thaliana
AT1G23960 2.0kb upstream 2.0kb upstream 3910 true Chr1: 8478407-8482316 Arabidopsis thaliana
AT1G23960 2.0kb upstream 2.0kb upstream 2000 false Chr1: 8480317-8482316 Arabidopsis thaliana
AT1G23960 2.0kb downstream 2.0kb downstream 3910 true Chr1: 8476407-8480316 Arabidopsis thaliana
AT1G23960 2.0kb downstream 2.0kb downstream 2000 false Chr1: 8476407-8478406 Arabidopsis thaliana
AT1G23960 5.0kb upstream 5.0kb upstream 6910 true Chr1: 8478407-8485316 Arabidopsis thaliana
AT1G23960 5.0kb upstream 5.0kb upstream 5000 false Chr1: 8480317-8485316 Arabidopsis thaliana
AT1G23960 5.0kb downstream 5.0kb downstream 6910 true Chr1: 8473407-8480316 Arabidopsis thaliana
AT1G23960 5.0kb downstream 5.0kb downstream 5000 false Chr1: 8473407-8478406 Arabidopsis thaliana
AT1G23960 10.0kb upstream 10.0kb upstream 11910 true Chr1: 8478407-8490316 Arabidopsis thaliana
AT1G23960 10.0kb upstream 10.0kb upstream 10000 false Chr1: 8480317-8490316 Arabidopsis thaliana
AT1G23960 10.0kb downstream 10.0kb downstream 11910 true Chr1: 8468407-8480316 Arabidopsis thaliana
AT1G23960 10.0kb downstream 10.0kb downstream 10000 false Chr1: 8468407-8478406 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121511751 5273 Angiosperm View MSA
122378564 5261 Brassicaceae View MSA
123801912 5264 Brassicales-Malvales View MSA
124299161 5266 SBM View MSA
124150649 5268 Malvidae View MSA
123876230 5270 Rosid View MSA
123459931 5271 Pentapetalae View MSA
122495313 5272 Eudicot View MSA
120784782 5274 Embryophyte View MSA
122826676 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.596        
cufflinks 14.934        
cufflinks 15.092        
cufflinks 15.807        
cufflinks 17.348       High
cufflinks 13.258       Low

0 Strain