Gene : AT1G23980 A. thaliana TAIR10
Defline:  (1 of 2) PTHR14155//PTHR14155:SF123 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL47 Genomic Order:  2429
Name:  ? AT1G23980 Secondary Identifier:  ? PAC:19655066
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G23980 0.5kb upstream 0.5kb upstream 1800 true Chr1: 8484703-8486502 Arabidopsis thaliana
AT1G23980 0.5kb upstream 0.5kb upstream 500 false Chr1: 8486003-8486502 Arabidopsis thaliana
AT1G23980 0.5kb downstream 0.5kb downstream 1800 true Chr1: 8484203-8486002 Arabidopsis thaliana
AT1G23980 0.5kb downstream 0.5kb downstream 500 false Chr1: 8484203-8484702 Arabidopsis thaliana
AT1G23980 1.0kb upstream 1.0kb upstream 2300 true Chr1: 8484703-8487002 Arabidopsis thaliana
AT1G23980 1.0kb upstream 1.0kb upstream 1000 false Chr1: 8486003-8487002 Arabidopsis thaliana
AT1G23980 1.0kb downstream 1.0kb downstream 2300 true Chr1: 8483703-8486002 Arabidopsis thaliana
AT1G23980 1.0kb downstream 1.0kb downstream 1000 false Chr1: 8483703-8484702 Arabidopsis thaliana
AT1G23980 2.0kb upstream 2.0kb upstream 3300 true Chr1: 8484703-8488002 Arabidopsis thaliana
AT1G23980 2.0kb upstream 2.0kb upstream 2000 false Chr1: 8486003-8488002 Arabidopsis thaliana
AT1G23980 2.0kb downstream 2.0kb downstream 3300 true Chr1: 8482703-8486002 Arabidopsis thaliana
AT1G23980 2.0kb downstream 2.0kb downstream 2000 false Chr1: 8482703-8484702 Arabidopsis thaliana
AT1G23980 5.0kb upstream 5.0kb upstream 6300 true Chr1: 8484703-8491002 Arabidopsis thaliana
AT1G23980 5.0kb upstream 5.0kb upstream 5000 false Chr1: 8486003-8491002 Arabidopsis thaliana
AT1G23980 5.0kb downstream 5.0kb downstream 6300 true Chr1: 8479703-8486002 Arabidopsis thaliana
AT1G23980 5.0kb downstream 5.0kb downstream 5000 false Chr1: 8479703-8484702 Arabidopsis thaliana
AT1G23980 10.0kb upstream 10.0kb upstream 11300 true Chr1: 8484703-8496002 Arabidopsis thaliana
AT1G23980 10.0kb upstream 10.0kb upstream 10000 false Chr1: 8486003-8496002 Arabidopsis thaliana
AT1G23980 10.0kb downstream 10.0kb downstream 11300 true Chr1: 8474703-8486002 Arabidopsis thaliana
AT1G23980 10.0kb downstream 10.0kb downstream 10000 false Chr1: 8474703-8484702 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041020 5273 Angiosperm View MSA
122371819 5261 Brassicaceae View MSA
123828669 5264 Brassicales-Malvales View MSA
124337432 5266 SBM View MSA
124250692 5268 Malvidae View MSA
124071790 5270 Rosid View MSA
123752396 5271 Pentapetalae View MSA
122790664 5272 Eudicot View MSA
123429130 5275 Viridiplantae View MSA
121351603 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.282        
cufflinks 5.051        
cufflinks 3.252        
cufflinks 5.053        
cufflinks 2.79       Low
cufflinks 5.535       High

0 Strain