Gene : OGG1 A. thaliana TAIR10
Primary Identifier:  ? AT1G21710 Defline:  (1 of 1) K03660 - N-glycosylase/DNA lyase (OGG1)
Genomic Order:  2189 Name:  ? AT1G21710
Secondary Identifier:  ? PAC:19654871
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G21710 0.5kb upstream 0.5kb upstream 2221 true Chr1: 7623896-7626116 Arabidopsis thaliana
AT1G21710 0.5kb upstream 0.5kb upstream 500 false Chr1: 7623896-7624395 Arabidopsis thaliana
AT1G21710 0.5kb downstream 0.5kb downstream 2221 true Chr1: 7624396-7626616 Arabidopsis thaliana
AT1G21710 0.5kb downstream 0.5kb downstream 500 false Chr1: 7626117-7626616 Arabidopsis thaliana
AT1G21710 1.0kb upstream 1.0kb upstream 2721 true Chr1: 7623396-7626116 Arabidopsis thaliana
AT1G21710 1.0kb upstream 1.0kb upstream 1000 false Chr1: 7623396-7624395 Arabidopsis thaliana
AT1G21710 1.0kb downstream 1.0kb downstream 2721 true Chr1: 7624396-7627116 Arabidopsis thaliana
AT1G21710 1.0kb downstream 1.0kb downstream 1000 false Chr1: 7626117-7627116 Arabidopsis thaliana
AT1G21710 2.0kb upstream 2.0kb upstream 3721 true Chr1: 7622396-7626116 Arabidopsis thaliana
AT1G21710 2.0kb upstream 2.0kb upstream 2000 false Chr1: 7622396-7624395 Arabidopsis thaliana
AT1G21710 2.0kb downstream 2.0kb downstream 3721 true Chr1: 7624396-7628116 Arabidopsis thaliana
AT1G21710 2.0kb downstream 2.0kb downstream 2000 false Chr1: 7626117-7628116 Arabidopsis thaliana
AT1G21710 5.0kb upstream 5.0kb upstream 6721 true Chr1: 7619396-7626116 Arabidopsis thaliana
AT1G21710 5.0kb upstream 5.0kb upstream 5000 false Chr1: 7619396-7624395 Arabidopsis thaliana
AT1G21710 5.0kb downstream 5.0kb downstream 6721 true Chr1: 7624396-7631116 Arabidopsis thaliana
AT1G21710 5.0kb downstream 5.0kb downstream 5000 false Chr1: 7626117-7631116 Arabidopsis thaliana
AT1G21710 10.0kb upstream 10.0kb upstream 11721 true Chr1: 7614396-7626116 Arabidopsis thaliana
AT1G21710 10.0kb upstream 10.0kb upstream 10000 false Chr1: 7614396-7624395 Arabidopsis thaliana
AT1G21710 10.0kb downstream 10.0kb downstream 11721 true Chr1: 7624396-7636116 Arabidopsis thaliana
AT1G21710 10.0kb downstream 10.0kb downstream 10000 false Chr1: 7626117-7636116 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371554 5261 Brassicaceae View MSA
123831597 5264 Brassicales-Malvales View MSA
124339045 5266 SBM View MSA
124242829 5268 Malvidae View MSA
124067306 5270 Rosid View MSA
123738201 5271 Pentapetalae View MSA
122792790 5272 Eudicot View MSA
122046442 5273 Angiosperm View MSA
121344747 5274 Embryophyte View MSA
123428453 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.797        
cufflinks 10.906       High
cufflinks 5.521       Low
cufflinks 10.57        
cufflinks 6.153        
cufflinks 9.18        

0 Strain