Gene : AT1G19980 A. thaliana TAIR10
Defline:  cytomatrix protein-related Genomic Order:  2010
Name:  ? AT1G19980 Secondary Identifier:  ? PAC:19657868
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G19980 0.5kb upstream 0.5kb upstream 2487 true Chr1: 6932516-6935002 Arabidopsis thaliana
AT1G19980 0.5kb upstream 0.5kb upstream 500 false Chr1: 6932516-6933015 Arabidopsis thaliana
AT1G19980 0.5kb downstream 0.5kb downstream 2487 true Chr1: 6933016-6935502 Arabidopsis thaliana
AT1G19980 0.5kb downstream 0.5kb downstream 500 false Chr1: 6935003-6935502 Arabidopsis thaliana
AT1G19980 1.0kb upstream 1.0kb upstream 2987 true Chr1: 6932016-6935002 Arabidopsis thaliana
AT1G19980 1.0kb upstream 1.0kb upstream 1000 false Chr1: 6932016-6933015 Arabidopsis thaliana
AT1G19980 1.0kb downstream 1.0kb downstream 2987 true Chr1: 6933016-6936002 Arabidopsis thaliana
AT1G19980 1.0kb downstream 1.0kb downstream 1000 false Chr1: 6935003-6936002 Arabidopsis thaliana
AT1G19980 2.0kb upstream 2.0kb upstream 3987 true Chr1: 6931016-6935002 Arabidopsis thaliana
AT1G19980 2.0kb upstream 2.0kb upstream 2000 false Chr1: 6931016-6933015 Arabidopsis thaliana
AT1G19980 2.0kb downstream 2.0kb downstream 3987 true Chr1: 6933016-6937002 Arabidopsis thaliana
AT1G19980 2.0kb downstream 2.0kb downstream 2000 false Chr1: 6935003-6937002 Arabidopsis thaliana
AT1G19980 5.0kb upstream 5.0kb upstream 6987 true Chr1: 6928016-6935002 Arabidopsis thaliana
AT1G19980 5.0kb upstream 5.0kb upstream 5000 false Chr1: 6928016-6933015 Arabidopsis thaliana
AT1G19980 5.0kb downstream 5.0kb downstream 6987 true Chr1: 6933016-6940002 Arabidopsis thaliana
AT1G19980 5.0kb downstream 5.0kb downstream 5000 false Chr1: 6935003-6940002 Arabidopsis thaliana
AT1G19980 10.0kb upstream 10.0kb upstream 11987 true Chr1: 6923016-6935002 Arabidopsis thaliana
AT1G19980 10.0kb upstream 10.0kb upstream 10000 false Chr1: 6923016-6933015 Arabidopsis thaliana
AT1G19980 10.0kb downstream 10.0kb downstream 11987 true Chr1: 6933016-6945002 Arabidopsis thaliana
AT1G19980 10.0kb downstream 10.0kb downstream 10000 false Chr1: 6935003-6945002 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368507 5261 Brassicaceae View MSA
123839676 5264 Brassicales-Malvales View MSA
124337342 5266 SBM View MSA
124251824 5268 Malvidae View MSA
124061028 5270 Rosid View MSA
123740705 5271 Pentapetalae View MSA
122794859 5272 Eudicot View MSA
122047772 5273 Angiosperm View MSA
121310791 5274 Embryophyte View MSA
123348191 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.872        
cufflinks 4.598        
cufflinks 2.129       Low
cufflinks 5.253       High
cufflinks 2.026       Low
cufflinks 4.592        

0 Strain