Gene : AT1G78410 A. thaliana TAIR10
Defline:  (1 of 2) PTHR34777//PTHR34777:SF1 - FAMILY NOT NAMED // VQ MOTIF-CONTAINING PROTEIN Genomic Order:  6814
Name:  ? AT1G78410 Secondary Identifier:  ? PAC:19657121
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G78410 0.5kb upstream 0.5kb upstream 1160 true Chr1: 29502082-29503241 Arabidopsis thaliana
AT1G78410 0.5kb upstream 0.5kb upstream 500 false Chr1: 29502082-29502581 Arabidopsis thaliana
AT1G78410 0.5kb downstream 0.5kb downstream 1160 true Chr1: 29502582-29503741 Arabidopsis thaliana
AT1G78410 0.5kb downstream 0.5kb downstream 500 false Chr1: 29503242-29503741 Arabidopsis thaliana
AT1G78410 1.0kb upstream 1.0kb upstream 1660 true Chr1: 29501582-29503241 Arabidopsis thaliana
AT1G78410 1.0kb upstream 1.0kb upstream 1000 false Chr1: 29501582-29502581 Arabidopsis thaliana
AT1G78410 1.0kb downstream 1.0kb downstream 1660 true Chr1: 29502582-29504241 Arabidopsis thaliana
AT1G78410 1.0kb downstream 1.0kb downstream 1000 false Chr1: 29503242-29504241 Arabidopsis thaliana
AT1G78410 2.0kb upstream 2.0kb upstream 2660 true Chr1: 29500582-29503241 Arabidopsis thaliana
AT1G78410 2.0kb upstream 2.0kb upstream 2000 false Chr1: 29500582-29502581 Arabidopsis thaliana
AT1G78410 2.0kb downstream 2.0kb downstream 2660 true Chr1: 29502582-29505241 Arabidopsis thaliana
AT1G78410 2.0kb downstream 2.0kb downstream 2000 false Chr1: 29503242-29505241 Arabidopsis thaliana
AT1G78410 5.0kb upstream 5.0kb upstream 5660 true Chr1: 29497582-29503241 Arabidopsis thaliana
AT1G78410 5.0kb upstream 5.0kb upstream 5000 false Chr1: 29497582-29502581 Arabidopsis thaliana
AT1G78410 5.0kb downstream 5.0kb downstream 5660 true Chr1: 29502582-29508241 Arabidopsis thaliana
AT1G78410 5.0kb downstream 5.0kb downstream 5000 false Chr1: 29503242-29508241 Arabidopsis thaliana
AT1G78410 10.0kb upstream 10.0kb upstream 10660 true Chr1: 29492582-29503241 Arabidopsis thaliana
AT1G78410 10.0kb upstream 10.0kb upstream 10000 false Chr1: 29492582-29502581 Arabidopsis thaliana
AT1G78410 10.0kb downstream 10.0kb downstream 10660 true Chr1: 29502582-29513241 Arabidopsis thaliana
AT1G78410 10.0kb downstream 10.0kb downstream 10000 false Chr1: 29503242-29513241 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026461 5273 Angiosperm View MSA
122379995 5261 Brassicaceae View MSA
123840624 5264 Brassicales-Malvales View MSA
124342218 5266 SBM View MSA
124240018 5268 Malvidae View MSA
124050155 5270 Rosid View MSA
123744131 5271 Pentapetalae View MSA
122770912 5272 Eudicot View MSA
121296343 5274 Embryophyte View MSA
123334522 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 31.247     High High
cufflinks 0.778       Low
cufflinks 10.684        
cufflinks 1.914        
cufflinks 18.564        
cufflinks 0.855       Low

0 Strain