Gene : AT1G78120 A. thaliana TAIR10
Defline:  (1 of 1) PTHR23083//PTHR23083:SF429 - TETRATRICOPEPTIDE REPEAT PROTEIN, TPR // SUBFAMILY NOT NAMED Genomic Order:  6787
Name:  ? AT1G78120 Secondary Identifier:  ? PAC:19654855
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G78120 0.5kb upstream 0.5kb upstream 2648 true Chr1: 29393939-29396586 Arabidopsis thaliana
AT1G78120 0.5kb upstream 0.5kb upstream 500 false Chr1: 29396087-29396586 Arabidopsis thaliana
AT1G78120 0.5kb downstream 0.5kb downstream 2648 true Chr1: 29393439-29396086 Arabidopsis thaliana
AT1G78120 0.5kb downstream 0.5kb downstream 500 false Chr1: 29393439-29393938 Arabidopsis thaliana
AT1G78120 1.0kb upstream 1.0kb upstream 3148 true Chr1: 29393939-29397086 Arabidopsis thaliana
AT1G78120 1.0kb upstream 1.0kb upstream 1000 false Chr1: 29396087-29397086 Arabidopsis thaliana
AT1G78120 1.0kb downstream 1.0kb downstream 3148 true Chr1: 29392939-29396086 Arabidopsis thaliana
AT1G78120 1.0kb downstream 1.0kb downstream 1000 false Chr1: 29392939-29393938 Arabidopsis thaliana
AT1G78120 2.0kb upstream 2.0kb upstream 4148 true Chr1: 29393939-29398086 Arabidopsis thaliana
AT1G78120 2.0kb upstream 2.0kb upstream 2000 false Chr1: 29396087-29398086 Arabidopsis thaliana
AT1G78120 2.0kb downstream 2.0kb downstream 4148 true Chr1: 29391939-29396086 Arabidopsis thaliana
AT1G78120 2.0kb downstream 2.0kb downstream 2000 false Chr1: 29391939-29393938 Arabidopsis thaliana
AT1G78120 5.0kb upstream 5.0kb upstream 7148 true Chr1: 29393939-29401086 Arabidopsis thaliana
AT1G78120 5.0kb upstream 5.0kb upstream 5000 false Chr1: 29396087-29401086 Arabidopsis thaliana
AT1G78120 5.0kb downstream 5.0kb downstream 7148 true Chr1: 29388939-29396086 Arabidopsis thaliana
AT1G78120 5.0kb downstream 5.0kb downstream 5000 false Chr1: 29388939-29393938 Arabidopsis thaliana
AT1G78120 10.0kb upstream 10.0kb upstream 12148 true Chr1: 29393939-29406086 Arabidopsis thaliana
AT1G78120 10.0kb upstream 10.0kb upstream 10000 false Chr1: 29396087-29406086 Arabidopsis thaliana
AT1G78120 10.0kb downstream 10.0kb downstream 12148 true Chr1: 29383939-29396086 Arabidopsis thaliana
AT1G78120 10.0kb downstream 10.0kb downstream 10000 false Chr1: 29383939-29393938 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364744 5261 Brassicaceae View MSA
123836984 5264 Brassicales-Malvales View MSA
124348383 5266 SBM View MSA
124245987 5268 Malvidae View MSA
124069860 5270 Rosid View MSA
123742749 5271 Pentapetalae View MSA
122798057 5272 Eudicot View MSA
122047040 5273 Angiosperm View MSA
121310683 5274 Embryophyte View MSA
123348108 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.665        
cufflinks 28.471        
cufflinks 0.195     Low Low
cufflinks 19.977        
cufflinks 0.179     Low Low
cufflinks 47.53     High High

0 Strain