Gene : AT1G77940 A. thaliana TAIR10
Defline:  (1 of 3) K02908 - large subunit ribosomal protein L30e (RP-L30e, RPL30) Genomic Order:  6770
Name:  ? AT1G77940 Secondary Identifier:  ? PAC:19649424
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G77940 0.5kb upstream 0.5kb upstream 1986 true Chr1: 29303897-29305882 Arabidopsis thaliana
AT1G77940 0.5kb upstream 0.5kb upstream 500 false Chr1: 29305383-29305882 Arabidopsis thaliana
AT1G77940 0.5kb downstream 0.5kb downstream 1986 true Chr1: 29303397-29305382 Arabidopsis thaliana
AT1G77940 0.5kb downstream 0.5kb downstream 500 false Chr1: 29303397-29303896 Arabidopsis thaliana
AT1G77940 1.0kb upstream 1.0kb upstream 2486 true Chr1: 29303897-29306382 Arabidopsis thaliana
AT1G77940 1.0kb upstream 1.0kb upstream 1000 false Chr1: 29305383-29306382 Arabidopsis thaliana
AT1G77940 1.0kb downstream 1.0kb downstream 2486 true Chr1: 29302897-29305382 Arabidopsis thaliana
AT1G77940 1.0kb downstream 1.0kb downstream 1000 false Chr1: 29302897-29303896 Arabidopsis thaliana
AT1G77940 2.0kb upstream 2.0kb upstream 3486 true Chr1: 29303897-29307382 Arabidopsis thaliana
AT1G77940 2.0kb upstream 2.0kb upstream 2000 false Chr1: 29305383-29307382 Arabidopsis thaliana
AT1G77940 2.0kb downstream 2.0kb downstream 3486 true Chr1: 29301897-29305382 Arabidopsis thaliana
AT1G77940 2.0kb downstream 2.0kb downstream 2000 false Chr1: 29301897-29303896 Arabidopsis thaliana
AT1G77940 5.0kb upstream 5.0kb upstream 6486 true Chr1: 29303897-29310382 Arabidopsis thaliana
AT1G77940 5.0kb upstream 5.0kb upstream 5000 false Chr1: 29305383-29310382 Arabidopsis thaliana
AT1G77940 5.0kb downstream 5.0kb downstream 6486 true Chr1: 29298897-29305382 Arabidopsis thaliana
AT1G77940 5.0kb downstream 5.0kb downstream 5000 false Chr1: 29298897-29303896 Arabidopsis thaliana
AT1G77940 10.0kb upstream 10.0kb upstream 11486 true Chr1: 29303897-29315382 Arabidopsis thaliana
AT1G77940 10.0kb upstream 10.0kb upstream 10000 false Chr1: 29305383-29315382 Arabidopsis thaliana
AT1G77940 10.0kb downstream 10.0kb downstream 11486 true Chr1: 29293897-29305382 Arabidopsis thaliana
AT1G77940 10.0kb downstream 10.0kb downstream 10000 false Chr1: 29293897-29303896 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375988 5261 Brassicaceae View MSA
123801104 5264 Brassicales-Malvales View MSA
124346762 5266 SBM View MSA
124244091 5268 Malvidae View MSA
124064182 5270 Rosid View MSA
123750614 5271 Pentapetalae View MSA
122788206 5272 Eudicot View MSA
122051684 5273 Angiosperm View MSA
121344063 5274 Embryophyte View MSA
123425041 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 91.818     High  
cufflinks 129.258     High  
cufflinks 74.343     High  
cufflinks 133.441     High  
cufflinks 52.575     High Low
cufflinks 152.901     High High

0 Strain