Gene : AT1G77630 A. thaliana TAIR10
Defline:  (1 of 2) PTHR33734:SF3 - LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 Genomic Order:  6733
Name:  ? AT1G77630 Secondary Identifier:  ? PAC:19650324
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G77630 0.5kb upstream 0.5kb upstream 2574 true Chr1: 29172957-29175530 Arabidopsis thaliana
AT1G77630 0.5kb upstream 0.5kb upstream 500 false Chr1: 29172957-29173456 Arabidopsis thaliana
AT1G77630 0.5kb downstream 0.5kb downstream 2574 true Chr1: 29173457-29176030 Arabidopsis thaliana
AT1G77630 0.5kb downstream 0.5kb downstream 500 false Chr1: 29175531-29176030 Arabidopsis thaliana
AT1G77630 1.0kb upstream 1.0kb upstream 3074 true Chr1: 29172457-29175530 Arabidopsis thaliana
AT1G77630 1.0kb upstream 1.0kb upstream 1000 false Chr1: 29172457-29173456 Arabidopsis thaliana
AT1G77630 1.0kb downstream 1.0kb downstream 3074 true Chr1: 29173457-29176530 Arabidopsis thaliana
AT1G77630 1.0kb downstream 1.0kb downstream 1000 false Chr1: 29175531-29176530 Arabidopsis thaliana
AT1G77630 2.0kb upstream 2.0kb upstream 4074 true Chr1: 29171457-29175530 Arabidopsis thaliana
AT1G77630 2.0kb upstream 2.0kb upstream 2000 false Chr1: 29171457-29173456 Arabidopsis thaliana
AT1G77630 2.0kb downstream 2.0kb downstream 4074 true Chr1: 29173457-29177530 Arabidopsis thaliana
AT1G77630 2.0kb downstream 2.0kb downstream 2000 false Chr1: 29175531-29177530 Arabidopsis thaliana
AT1G77630 5.0kb upstream 5.0kb upstream 7074 true Chr1: 29168457-29175530 Arabidopsis thaliana
AT1G77630 5.0kb upstream 5.0kb upstream 5000 false Chr1: 29168457-29173456 Arabidopsis thaliana
AT1G77630 5.0kb downstream 5.0kb downstream 7074 true Chr1: 29173457-29180530 Arabidopsis thaliana
AT1G77630 5.0kb downstream 5.0kb downstream 5000 false Chr1: 29175531-29180530 Arabidopsis thaliana
AT1G77630 10.0kb upstream 10.0kb upstream 12074 true Chr1: 29163457-29175530 Arabidopsis thaliana
AT1G77630 10.0kb upstream 10.0kb upstream 10000 false Chr1: 29163457-29173456 Arabidopsis thaliana
AT1G77630 10.0kb downstream 10.0kb downstream 12074 true Chr1: 29173457-29185530 Arabidopsis thaliana
AT1G77630 10.0kb downstream 10.0kb downstream 10000 false Chr1: 29175531-29185530 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121510620 5273 Angiosperm View MSA
122366204 5261 Brassicaceae View MSA
123799127 5264 Brassicales-Malvales View MSA
124296678 5266 SBM View MSA
124148760 5268 Malvidae View MSA
123874696 5270 Rosid View MSA
123458628 5271 Pentapetalae View MSA
122494030 5272 Eudicot View MSA
121350976 5274 Embryophyte View MSA
123381953 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.358        
cufflinks 11.04        
cufflinks 4.52       Low
cufflinks 9.601        
cufflinks 4.071       Low
cufflinks 14.893       High

0 Strain