Gene : TPPB A. thaliana TAIR10
Primary Identifier:  ? AT1G78090 Defline:  (1 of 2) PTHR10788:SF26 - TREHALOSE-PHOSPHATE PHOSPHATASE B-RELATED
Genomic Order:  6784 Name:  ? AT1G78090
Secondary Identifier:  ? PAC:19653536
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G78090 0.5kb upstream 0.5kb upstream 3116 true Chr1: 29373389-29376504 Arabidopsis thaliana
AT1G78090 0.5kb upstream 0.5kb upstream 500 false Chr1: 29373389-29373888 Arabidopsis thaliana
AT1G78090 0.5kb downstream 0.5kb downstream 3116 true Chr1: 29373889-29377004 Arabidopsis thaliana
AT1G78090 0.5kb downstream 0.5kb downstream 500 false Chr1: 29376505-29377004 Arabidopsis thaliana
AT1G78090 1.0kb upstream 1.0kb upstream 3616 true Chr1: 29372889-29376504 Arabidopsis thaliana
AT1G78090 1.0kb upstream 1.0kb upstream 1000 false Chr1: 29372889-29373888 Arabidopsis thaliana
AT1G78090 1.0kb downstream 1.0kb downstream 3616 true Chr1: 29373889-29377504 Arabidopsis thaliana
AT1G78090 1.0kb downstream 1.0kb downstream 1000 false Chr1: 29376505-29377504 Arabidopsis thaliana
AT1G78090 2.0kb upstream 2.0kb upstream 4616 true Chr1: 29371889-29376504 Arabidopsis thaliana
AT1G78090 2.0kb upstream 2.0kb upstream 2000 false Chr1: 29371889-29373888 Arabidopsis thaliana
AT1G78090 2.0kb downstream 2.0kb downstream 4616 true Chr1: 29373889-29378504 Arabidopsis thaliana
AT1G78090 2.0kb downstream 2.0kb downstream 2000 false Chr1: 29376505-29378504 Arabidopsis thaliana
AT1G78090 5.0kb upstream 5.0kb upstream 7616 true Chr1: 29368889-29376504 Arabidopsis thaliana
AT1G78090 5.0kb upstream 5.0kb upstream 5000 false Chr1: 29368889-29373888 Arabidopsis thaliana
AT1G78090 5.0kb downstream 5.0kb downstream 7616 true Chr1: 29373889-29381504 Arabidopsis thaliana
AT1G78090 5.0kb downstream 5.0kb downstream 5000 false Chr1: 29376505-29381504 Arabidopsis thaliana
AT1G78090 10.0kb upstream 10.0kb upstream 12616 true Chr1: 29363889-29376504 Arabidopsis thaliana
AT1G78090 10.0kb upstream 10.0kb upstream 10000 false Chr1: 29363889-29373888 Arabidopsis thaliana
AT1G78090 10.0kb downstream 10.0kb downstream 12616 true Chr1: 29373889-29386504 Arabidopsis thaliana
AT1G78090 10.0kb downstream 10.0kb downstream 10000 false Chr1: 29376505-29386504 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371801 5261 Brassicaceae View MSA
123839061 5264 Brassicales-Malvales View MSA
124341699 5266 SBM View MSA
124249781 5268 Malvidae View MSA
124069564 5270 Rosid View MSA
123746966 5271 Pentapetalae View MSA
122786046 5272 Eudicot View MSA
122042129 5273 Angiosperm View MSA
121351669 5274 Embryophyte View MSA
123427869 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.23     Low  
cufflinks 7.198        
cufflinks 0.139     Low  
cufflinks 7.286        
cufflinks 0.046     Low Low
cufflinks 9.94        

0 Strain