Gene : AT1G77405 A. thaliana TAIR10
Defline:  (1 of 423) PF13041 - PPR repeat family (PPR_2) Genomic Order:  6711
Name:  ? AT1G77405 Secondary Identifier:  ? PAC:19658329
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G77405 0.5kb upstream 0.5kb upstream 1877 true Chr1: 29086645-29088521 Arabidopsis thaliana
AT1G77405 0.5kb upstream 0.5kb upstream 500 false Chr1: 29086645-29087144 Arabidopsis thaliana
AT1G77405 0.5kb downstream 0.5kb downstream 1877 true Chr1: 29087145-29089021 Arabidopsis thaliana
AT1G77405 0.5kb downstream 0.5kb downstream 500 false Chr1: 29088522-29089021 Arabidopsis thaliana
AT1G77405 1.0kb upstream 1.0kb upstream 2377 true Chr1: 29086145-29088521 Arabidopsis thaliana
AT1G77405 1.0kb upstream 1.0kb upstream 1000 false Chr1: 29086145-29087144 Arabidopsis thaliana
AT1G77405 1.0kb downstream 1.0kb downstream 2377 true Chr1: 29087145-29089521 Arabidopsis thaliana
AT1G77405 1.0kb downstream 1.0kb downstream 1000 false Chr1: 29088522-29089521 Arabidopsis thaliana
AT1G77405 2.0kb upstream 2.0kb upstream 3377 true Chr1: 29085145-29088521 Arabidopsis thaliana
AT1G77405 2.0kb upstream 2.0kb upstream 2000 false Chr1: 29085145-29087144 Arabidopsis thaliana
AT1G77405 2.0kb downstream 2.0kb downstream 3377 true Chr1: 29087145-29090521 Arabidopsis thaliana
AT1G77405 2.0kb downstream 2.0kb downstream 2000 false Chr1: 29088522-29090521 Arabidopsis thaliana
AT1G77405 5.0kb upstream 5.0kb upstream 6377 true Chr1: 29082145-29088521 Arabidopsis thaliana
AT1G77405 5.0kb upstream 5.0kb upstream 5000 false Chr1: 29082145-29087144 Arabidopsis thaliana
AT1G77405 5.0kb downstream 5.0kb downstream 6377 true Chr1: 29087145-29093521 Arabidopsis thaliana
AT1G77405 5.0kb downstream 5.0kb downstream 5000 false Chr1: 29088522-29093521 Arabidopsis thaliana
AT1G77405 10.0kb upstream 10.0kb upstream 11377 true Chr1: 29077145-29088521 Arabidopsis thaliana
AT1G77405 10.0kb upstream 10.0kb upstream 10000 false Chr1: 29077145-29087144 Arabidopsis thaliana
AT1G77405 10.0kb downstream 10.0kb downstream 11377 true Chr1: 29087145-29098521 Arabidopsis thaliana
AT1G77405 10.0kb downstream 10.0kb downstream 10000 false Chr1: 29088522-29098521 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361292 5261 Brassicaceae View MSA
123831655 5264 Brassicales-Malvales View MSA
124346426 5266 SBM View MSA
124238656 5268 Malvidae View MSA
124062168 5270 Rosid View MSA
123736487 5271 Pentapetalae View MSA
122788390 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.035        
cufflinks 2.281       High
cufflinks 0.872        
cufflinks 2.127        
cufflinks 0.584       Low
cufflinks 1.824        

0 Strain