Gene : SGR5 A. thaliana TAIR10
Primary Identifier:  ? AT2G01940 Defline:  (1 of 1) PTHR34946//PTHR34946:SF2 - FAMILY NOT NAMED // PROTEIN SHOOT GRAVITROPISM 5
Genomic Order:  98 Name:  ? AT2G01940
Secondary Identifier:  ? PAC:19638227
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G01940 0.5kb upstream 0.5kb upstream 3303 true Chr2: 431775-435077 Arabidopsis thaliana
AT2G01940 0.5kb upstream 0.5kb upstream 500 false Chr2: 431775-432274 Arabidopsis thaliana
AT2G01940 0.5kb downstream 0.5kb downstream 3303 true Chr2: 432275-435577 Arabidopsis thaliana
AT2G01940 0.5kb downstream 0.5kb downstream 500 false Chr2: 435078-435577 Arabidopsis thaliana
AT2G01940 1.0kb upstream 1.0kb upstream 3803 true Chr2: 431275-435077 Arabidopsis thaliana
AT2G01940 1.0kb upstream 1.0kb upstream 1000 false Chr2: 431275-432274 Arabidopsis thaliana
AT2G01940 1.0kb downstream 1.0kb downstream 3803 true Chr2: 432275-436077 Arabidopsis thaliana
AT2G01940 1.0kb downstream 1.0kb downstream 1000 false Chr2: 435078-436077 Arabidopsis thaliana
AT2G01940 2.0kb upstream 2.0kb upstream 4803 true Chr2: 430275-435077 Arabidopsis thaliana
AT2G01940 2.0kb upstream 2.0kb upstream 2000 false Chr2: 430275-432274 Arabidopsis thaliana
AT2G01940 2.0kb downstream 2.0kb downstream 4803 true Chr2: 432275-437077 Arabidopsis thaliana
AT2G01940 2.0kb downstream 2.0kb downstream 2000 false Chr2: 435078-437077 Arabidopsis thaliana
AT2G01940 5.0kb upstream 5.0kb upstream 7803 true Chr2: 427275-435077 Arabidopsis thaliana
AT2G01940 5.0kb upstream 5.0kb upstream 5000 false Chr2: 427275-432274 Arabidopsis thaliana
AT2G01940 5.0kb downstream 5.0kb downstream 7803 true Chr2: 432275-440077 Arabidopsis thaliana
AT2G01940 5.0kb downstream 5.0kb downstream 5000 false Chr2: 435078-440077 Arabidopsis thaliana
AT2G01940 10.0kb upstream 10.0kb upstream 12803 true Chr2: 422275-435077 Arabidopsis thaliana
AT2G01940 10.0kb upstream 10.0kb upstream 10000 false Chr2: 422275-432274 Arabidopsis thaliana
AT2G01940 10.0kb downstream 10.0kb downstream 12803 true Chr2: 432275-445077 Arabidopsis thaliana
AT2G01940 10.0kb downstream 10.0kb downstream 10000 false Chr2: 435078-445077 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379568 5261 Brassicaceae View MSA
123829003 5264 Brassicales-Malvales View MSA
124339672 5266 SBM View MSA
124253965 5268 Malvidae View MSA
124069304 5270 Rosid View MSA
123753156 5271 Pentapetalae View MSA
122787827 5272 Eudicot View MSA
122044064 5273 Angiosperm View MSA
121351060 5274 Embryophyte View MSA
123428588 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.628        
cufflinks 0.137     Low Low
cufflinks 0.666       High
cufflinks 0.206     Low  
cufflinks 0.56        
cufflinks 0.177     Low  

0 Strain