Gene : AT2G45540 A. thaliana TAIR10
Defline:  (1 of 2) PTHR13743//PTHR13743:SF16 - BEIGE/BEACH-RELATED // PROTEIN T01H10.8 Genomic Order:  3973
Name:  ? AT2G45540 Secondary Identifier:  ? PAC:19642483
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G45540 0.5kb upstream 0.5kb upstream 15843 true Chr2: 18757489-18773331 Arabidopsis thaliana
AT2G45540 0.5kb upstream 0.5kb upstream 500 false Chr2: 18772832-18773331 Arabidopsis thaliana
AT2G45540 0.5kb downstream 0.5kb downstream 15843 true Chr2: 18756989-18772831 Arabidopsis thaliana
AT2G45540 0.5kb downstream 0.5kb downstream 500 false Chr2: 18756989-18757488 Arabidopsis thaliana
AT2G45540 1.0kb upstream 1.0kb upstream 16343 true Chr2: 18757489-18773831 Arabidopsis thaliana
AT2G45540 1.0kb upstream 1.0kb upstream 1000 false Chr2: 18772832-18773831 Arabidopsis thaliana
AT2G45540 1.0kb downstream 1.0kb downstream 16343 true Chr2: 18756489-18772831 Arabidopsis thaliana
AT2G45540 1.0kb downstream 1.0kb downstream 1000 false Chr2: 18756489-18757488 Arabidopsis thaliana
AT2G45540 2.0kb upstream 2.0kb upstream 17343 true Chr2: 18757489-18774831 Arabidopsis thaliana
AT2G45540 2.0kb upstream 2.0kb upstream 2000 false Chr2: 18772832-18774831 Arabidopsis thaliana
AT2G45540 2.0kb downstream 2.0kb downstream 17343 true Chr2: 18755489-18772831 Arabidopsis thaliana
AT2G45540 2.0kb downstream 2.0kb downstream 2000 false Chr2: 18755489-18757488 Arabidopsis thaliana
AT2G45540 5.0kb upstream 5.0kb upstream 20343 true Chr2: 18757489-18777831 Arabidopsis thaliana
AT2G45540 5.0kb upstream 5.0kb upstream 5000 false Chr2: 18772832-18777831 Arabidopsis thaliana
AT2G45540 5.0kb downstream 5.0kb downstream 20343 true Chr2: 18752489-18772831 Arabidopsis thaliana
AT2G45540 5.0kb downstream 5.0kb downstream 5000 false Chr2: 18752489-18757488 Arabidopsis thaliana
AT2G45540 10.0kb upstream 10.0kb upstream 25343 true Chr2: 18757489-18782831 Arabidopsis thaliana
AT2G45540 10.0kb upstream 10.0kb upstream 10000 false Chr2: 18772832-18782831 Arabidopsis thaliana
AT2G45540 10.0kb downstream 10.0kb downstream 25343 true Chr2: 18747489-18772831 Arabidopsis thaliana
AT2G45540 10.0kb downstream 10.0kb downstream 10000 false Chr2: 18747489-18757488 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365241 5261 Brassicaceae View MSA
123829103 5264 Brassicales-Malvales View MSA
124321574 5266 SBM View MSA
124242876 5268 Malvidae View MSA
124066229 5270 Rosid View MSA
123745367 5271 Pentapetalae View MSA
122791781 5272 Eudicot View MSA
122051109 5273 Angiosperm View MSA
121349597 5274 Embryophyte View MSA
123381372 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.078        
cufflinks 8.146        
cufflinks 4.435       Low
cufflinks 8.58        
cufflinks 4.515       Low
cufflinks 9.591       High

0 Strain