Gene : AT2G46040 A. thaliana TAIR10
Defline:  (1 of 1) PTHR22970:SF23 - AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1 Genomic Order:  4022
Name:  ? AT2G46040 Secondary Identifier:  ? PAC:19643039
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G46040 0.5kb upstream 0.5kb upstream 3647 true Chr2: 18935301-18938947 Arabidopsis thaliana
AT2G46040 0.5kb upstream 0.5kb upstream 500 false Chr2: 18938448-18938947 Arabidopsis thaliana
AT2G46040 0.5kb downstream 0.5kb downstream 3647 true Chr2: 18934801-18938447 Arabidopsis thaliana
AT2G46040 0.5kb downstream 0.5kb downstream 500 false Chr2: 18934801-18935300 Arabidopsis thaliana
AT2G46040 1.0kb upstream 1.0kb upstream 4147 true Chr2: 18935301-18939447 Arabidopsis thaliana
AT2G46040 1.0kb upstream 1.0kb upstream 1000 false Chr2: 18938448-18939447 Arabidopsis thaliana
AT2G46040 1.0kb downstream 1.0kb downstream 4147 true Chr2: 18934301-18938447 Arabidopsis thaliana
AT2G46040 1.0kb downstream 1.0kb downstream 1000 false Chr2: 18934301-18935300 Arabidopsis thaliana
AT2G46040 2.0kb upstream 2.0kb upstream 5147 true Chr2: 18935301-18940447 Arabidopsis thaliana
AT2G46040 2.0kb upstream 2.0kb upstream 2000 false Chr2: 18938448-18940447 Arabidopsis thaliana
AT2G46040 2.0kb downstream 2.0kb downstream 5147 true Chr2: 18933301-18938447 Arabidopsis thaliana
AT2G46040 2.0kb downstream 2.0kb downstream 2000 false Chr2: 18933301-18935300 Arabidopsis thaliana
AT2G46040 5.0kb upstream 5.0kb upstream 8147 true Chr2: 18935301-18943447 Arabidopsis thaliana
AT2G46040 5.0kb upstream 5.0kb upstream 5000 false Chr2: 18938448-18943447 Arabidopsis thaliana
AT2G46040 5.0kb downstream 5.0kb downstream 8147 true Chr2: 18930301-18938447 Arabidopsis thaliana
AT2G46040 5.0kb downstream 5.0kb downstream 5000 false Chr2: 18930301-18935300 Arabidopsis thaliana
AT2G46040 10.0kb upstream 10.0kb upstream 13147 true Chr2: 18935301-18948447 Arabidopsis thaliana
AT2G46040 10.0kb upstream 10.0kb upstream 10000 false Chr2: 18938448-18948447 Arabidopsis thaliana
AT2G46040 10.0kb downstream 10.0kb downstream 13147 true Chr2: 18925301-18938447 Arabidopsis thaliana
AT2G46040 10.0kb downstream 10.0kb downstream 10000 false Chr2: 18925301-18935300 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366668 5261 Brassicaceae View MSA
123836319 5264 Brassicales-Malvales View MSA
124343998 5266 SBM View MSA
124241936 5268 Malvidae View MSA
124068445 5270 Rosid View MSA
123753441 5271 Pentapetalae View MSA
122795804 5272 Eudicot View MSA
122049441 5273 Angiosperm View MSA
121348389 5274 Embryophyte View MSA
123380842 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.381        
cufflinks 1.924        
cufflinks 1.323        
cufflinks 2.0        
cufflinks 1.061       Low
cufflinks 2.272        

0 Strain