Gene : AT1G80500 A. thaliana TAIR10
Defline:  (1 of 1) KOG3487 - TRAPP 20 K subunit Genomic Order:  7026
Name:  ? AT1G80500 Secondary Identifier:  ? PAC:19649929
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G80500 0.5kb upstream 0.5kb upstream 2640 true Chr1: 30270029-30272668 Arabidopsis thaliana
AT1G80500 0.5kb upstream 0.5kb upstream 500 false Chr1: 30270029-30270528 Arabidopsis thaliana
AT1G80500 0.5kb downstream 0.5kb downstream 2640 true Chr1: 30270529-30273168 Arabidopsis thaliana
AT1G80500 0.5kb downstream 0.5kb downstream 500 false Chr1: 30272669-30273168 Arabidopsis thaliana
AT1G80500 1.0kb upstream 1.0kb upstream 3140 true Chr1: 30269529-30272668 Arabidopsis thaliana
AT1G80500 1.0kb upstream 1.0kb upstream 1000 false Chr1: 30269529-30270528 Arabidopsis thaliana
AT1G80500 1.0kb downstream 1.0kb downstream 3140 true Chr1: 30270529-30273668 Arabidopsis thaliana
AT1G80500 1.0kb downstream 1.0kb downstream 1000 false Chr1: 30272669-30273668 Arabidopsis thaliana
AT1G80500 2.0kb upstream 2.0kb upstream 4140 true Chr1: 30268529-30272668 Arabidopsis thaliana
AT1G80500 2.0kb upstream 2.0kb upstream 2000 false Chr1: 30268529-30270528 Arabidopsis thaliana
AT1G80500 2.0kb downstream 2.0kb downstream 4140 true Chr1: 30270529-30274668 Arabidopsis thaliana
AT1G80500 2.0kb downstream 2.0kb downstream 2000 false Chr1: 30272669-30274668 Arabidopsis thaliana
AT1G80500 5.0kb upstream 5.0kb upstream 7140 true Chr1: 30265529-30272668 Arabidopsis thaliana
AT1G80500 5.0kb upstream 5.0kb upstream 5000 false Chr1: 30265529-30270528 Arabidopsis thaliana
AT1G80500 5.0kb downstream 5.0kb downstream 7140 true Chr1: 30270529-30277668 Arabidopsis thaliana
AT1G80500 5.0kb downstream 5.0kb downstream 5000 false Chr1: 30272669-30277668 Arabidopsis thaliana
AT1G80500 10.0kb upstream 10.0kb upstream 12140 true Chr1: 30260529-30272668 Arabidopsis thaliana
AT1G80500 10.0kb upstream 10.0kb upstream 10000 false Chr1: 30260529-30270528 Arabidopsis thaliana
AT1G80500 10.0kb downstream 10.0kb downstream 12140 true Chr1: 30270529-30282668 Arabidopsis thaliana
AT1G80500 10.0kb downstream 10.0kb downstream 10000 false Chr1: 30272669-30282668 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377237 5261 Brassicaceae View MSA
123839804 5264 Brassicales-Malvales View MSA
124342780 5266 SBM View MSA
124252773 5268 Malvidae View MSA
124060844 5270 Rosid View MSA
123746210 5271 Pentapetalae View MSA
122790146 5272 Eudicot View MSA
122049402 5273 Angiosperm View MSA
123429051 5275 Viridiplantae View MSA
121344946 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.405        
cufflinks 19.011        
cufflinks 21.657        
cufflinks 18.041       Low
cufflinks 22.27       High
cufflinks 20.105        

0 Strain