Gene : AT1G80540 A. thaliana TAIR10
Defline:  (1 of 2) PTHR31414:SF1 - TRANSMEMBRANE PROTEIN DDB_G0292058 Genomic Order:  7030
Name:  ? AT1G80540 Secondary Identifier:  ? PAC:19653528
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G80540 0.5kb upstream 0.5kb upstream 3182 true Chr1: 30281638-30284819 Arabidopsis thaliana
AT1G80540 0.5kb upstream 0.5kb upstream 500 false Chr1: 30284320-30284819 Arabidopsis thaliana
AT1G80540 0.5kb downstream 0.5kb downstream 3182 true Chr1: 30281138-30284319 Arabidopsis thaliana
AT1G80540 0.5kb downstream 0.5kb downstream 500 false Chr1: 30281138-30281637 Arabidopsis thaliana
AT1G80540 1.0kb upstream 1.0kb upstream 3682 true Chr1: 30281638-30285319 Arabidopsis thaliana
AT1G80540 1.0kb upstream 1.0kb upstream 1000 false Chr1: 30284320-30285319 Arabidopsis thaliana
AT1G80540 1.0kb downstream 1.0kb downstream 3682 true Chr1: 30280638-30284319 Arabidopsis thaliana
AT1G80540 1.0kb downstream 1.0kb downstream 1000 false Chr1: 30280638-30281637 Arabidopsis thaliana
AT1G80540 2.0kb upstream 2.0kb upstream 4682 true Chr1: 30281638-30286319 Arabidopsis thaliana
AT1G80540 2.0kb upstream 2.0kb upstream 2000 false Chr1: 30284320-30286319 Arabidopsis thaliana
AT1G80540 2.0kb downstream 2.0kb downstream 4682 true Chr1: 30279638-30284319 Arabidopsis thaliana
AT1G80540 2.0kb downstream 2.0kb downstream 2000 false Chr1: 30279638-30281637 Arabidopsis thaliana
AT1G80540 5.0kb upstream 5.0kb upstream 7682 true Chr1: 30281638-30289319 Arabidopsis thaliana
AT1G80540 5.0kb upstream 5.0kb upstream 5000 false Chr1: 30284320-30289319 Arabidopsis thaliana
AT1G80540 5.0kb downstream 5.0kb downstream 7682 true Chr1: 30276638-30284319 Arabidopsis thaliana
AT1G80540 5.0kb downstream 5.0kb downstream 5000 false Chr1: 30276638-30281637 Arabidopsis thaliana
AT1G80540 10.0kb upstream 10.0kb upstream 12682 true Chr1: 30281638-30294319 Arabidopsis thaliana
AT1G80540 10.0kb upstream 10.0kb upstream 10000 false Chr1: 30284320-30294319 Arabidopsis thaliana
AT1G80540 10.0kb downstream 10.0kb downstream 12682 true Chr1: 30271638-30284319 Arabidopsis thaliana
AT1G80540 10.0kb downstream 10.0kb downstream 10000 false Chr1: 30271638-30281637 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378829 5261 Brassicaceae View MSA
123839550 5264 Brassicales-Malvales View MSA
124344666 5266 SBM View MSA
124246122 5268 Malvidae View MSA
124069186 5270 Rosid View MSA
123747530 5271 Pentapetalae View MSA
122793265 5272 Eudicot View MSA
122043467 5273 Angiosperm View MSA
123429125 5275 Viridiplantae View MSA
121350323 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.032     Low  
cufflinks 0.006     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.012     Low  
cufflinks 0.038     Low  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain