Gene : PP2-B11 A. thaliana TAIR10
Primary Identifier:  ? AT1G80110 Defline:  (1 of 8) PTHR32278//PTHR32278:SF6 - FAMILY NOT NAMED // F-BOX PROTEIN PP2-B1-RELATED
Genomic Order:  6987 Name:  ? AT1G80110
Secondary Identifier:  ? PAC:19652531
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G80110 0.5kb upstream 0.5kb upstream 2076 true Chr1: 30134881-30136956 Arabidopsis thaliana
AT1G80110 0.5kb upstream 0.5kb upstream 500 false Chr1: 30134881-30135380 Arabidopsis thaliana
AT1G80110 0.5kb downstream 0.5kb downstream 2076 true Chr1: 30135381-30137456 Arabidopsis thaliana
AT1G80110 0.5kb downstream 0.5kb downstream 500 false Chr1: 30136957-30137456 Arabidopsis thaliana
AT1G80110 1.0kb upstream 1.0kb upstream 2576 true Chr1: 30134381-30136956 Arabidopsis thaliana
AT1G80110 1.0kb upstream 1.0kb upstream 1000 false Chr1: 30134381-30135380 Arabidopsis thaliana
AT1G80110 1.0kb downstream 1.0kb downstream 2576 true Chr1: 30135381-30137956 Arabidopsis thaliana
AT1G80110 1.0kb downstream 1.0kb downstream 1000 false Chr1: 30136957-30137956 Arabidopsis thaliana
AT1G80110 2.0kb upstream 2.0kb upstream 3576 true Chr1: 30133381-30136956 Arabidopsis thaliana
AT1G80110 2.0kb upstream 2.0kb upstream 2000 false Chr1: 30133381-30135380 Arabidopsis thaliana
AT1G80110 2.0kb downstream 2.0kb downstream 3576 true Chr1: 30135381-30138956 Arabidopsis thaliana
AT1G80110 2.0kb downstream 2.0kb downstream 2000 false Chr1: 30136957-30138956 Arabidopsis thaliana
AT1G80110 5.0kb upstream 5.0kb upstream 6576 true Chr1: 30130381-30136956 Arabidopsis thaliana
AT1G80110 5.0kb upstream 5.0kb upstream 5000 false Chr1: 30130381-30135380 Arabidopsis thaliana
AT1G80110 5.0kb downstream 5.0kb downstream 6576 true Chr1: 30135381-30141956 Arabidopsis thaliana
AT1G80110 5.0kb downstream 5.0kb downstream 5000 false Chr1: 30136957-30141956 Arabidopsis thaliana
AT1G80110 10.0kb upstream 10.0kb upstream 11576 true Chr1: 30125381-30136956 Arabidopsis thaliana
AT1G80110 10.0kb upstream 10.0kb upstream 10000 false Chr1: 30125381-30135380 Arabidopsis thaliana
AT1G80110 10.0kb downstream 10.0kb downstream 11576 true Chr1: 30135381-30146956 Arabidopsis thaliana
AT1G80110 10.0kb downstream 10.0kb downstream 10000 false Chr1: 30136957-30146956 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367943 5261 Brassicaceae View MSA
123835052 5264 Brassicales-Malvales View MSA
124349702 5266 SBM View MSA
124251424 5268 Malvidae View MSA
124073943 5270 Rosid View MSA
123752990 5271 Pentapetalae View MSA
122797907 5272 Eudicot View MSA
122050927 5273 Angiosperm View MSA
121349666 5274 Embryophyte View MSA
123381391 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.159       Low
cufflinks 9.317        
cufflinks 6.298        
cufflinks 10.534        
cufflinks 7.905        
cufflinks 9.402        

0 Strain