Gene : AT1G80170 A. thaliana TAIR10
Defline:  (1 of 56) 3.2.1.15 - Polygalacturonase / Pectinase Genomic Order:  6994
Name:  ? AT1G80170 Secondary Identifier:  ? PAC:19654539
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-1081 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G80170 0.5kb upstream 0.5kb upstream 2806 true Chr1: 30153408-30156213 Arabidopsis thaliana
AT1G80170 0.5kb upstream 0.5kb upstream 500 false Chr1: 30155714-30156213 Arabidopsis thaliana
AT1G80170 0.5kb downstream 0.5kb downstream 2806 true Chr1: 30152908-30155713 Arabidopsis thaliana
AT1G80170 0.5kb downstream 0.5kb downstream 500 false Chr1: 30152908-30153407 Arabidopsis thaliana
AT1G80170 1.0kb upstream 1.0kb upstream 3306 true Chr1: 30153408-30156713 Arabidopsis thaliana
AT1G80170 1.0kb upstream 1.0kb upstream 1000 false Chr1: 30155714-30156713 Arabidopsis thaliana
AT1G80170 1.0kb downstream 1.0kb downstream 3306 true Chr1: 30152408-30155713 Arabidopsis thaliana
AT1G80170 1.0kb downstream 1.0kb downstream 1000 false Chr1: 30152408-30153407 Arabidopsis thaliana
AT1G80170 2.0kb upstream 2.0kb upstream 4306 true Chr1: 30153408-30157713 Arabidopsis thaliana
AT1G80170 2.0kb upstream 2.0kb upstream 2000 false Chr1: 30155714-30157713 Arabidopsis thaliana
AT1G80170 2.0kb downstream 2.0kb downstream 4306 true Chr1: 30151408-30155713 Arabidopsis thaliana
AT1G80170 2.0kb downstream 2.0kb downstream 2000 false Chr1: 30151408-30153407 Arabidopsis thaliana
AT1G80170 5.0kb upstream 5.0kb upstream 7306 true Chr1: 30153408-30160713 Arabidopsis thaliana
AT1G80170 5.0kb upstream 5.0kb upstream 5000 false Chr1: 30155714-30160713 Arabidopsis thaliana
AT1G80170 5.0kb downstream 5.0kb downstream 7306 true Chr1: 30148408-30155713 Arabidopsis thaliana
AT1G80170 5.0kb downstream 5.0kb downstream 5000 false Chr1: 30148408-30153407 Arabidopsis thaliana
AT1G80170 10.0kb upstream 10.0kb upstream 12306 true Chr1: 30153408-30165713 Arabidopsis thaliana
AT1G80170 10.0kb upstream 10.0kb upstream 10000 false Chr1: 30155714-30165713 Arabidopsis thaliana
AT1G80170 10.0kb downstream 10.0kb downstream 12306 true Chr1: 30143408-30155713 Arabidopsis thaliana
AT1G80170 10.0kb downstream 10.0kb downstream 10000 false Chr1: 30143408-30153407 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375088 5261 Brassicaceae View MSA
123841126 5264 Brassicales-Malvales View MSA
124345334 5266 SBM View MSA
124254286 5268 Malvidae View MSA
124062237 5270 Rosid View MSA
123747899 5271 Pentapetalae View MSA
122789338 5272 Eudicot View MSA
122047278 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.645       Low
cufflinks 10.085       High
cufflinks 4.121        
cufflinks 8.993        
cufflinks 4.496        
cufflinks 9.215        

0 Strain