Gene : AT1G63230 A. thaliana TAIR10
Defline:  (1 of 18) PF12854//PF13041 - PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  5239
Name:  ? AT1G63230 Secondary Identifier:  ? PAC:19654843
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G63230 0.5kb upstream 0.5kb upstream 2158 true Chr1: 23450154-23452311 Arabidopsis thaliana
AT1G63230 0.5kb upstream 0.5kb upstream 500 false Chr1: 23450154-23450653 Arabidopsis thaliana
AT1G63230 0.5kb downstream 0.5kb downstream 2158 true Chr1: 23450654-23452811 Arabidopsis thaliana
AT1G63230 0.5kb downstream 0.5kb downstream 500 false Chr1: 23452312-23452811 Arabidopsis thaliana
AT1G63230 1.0kb upstream 1.0kb upstream 2658 true Chr1: 23449654-23452311 Arabidopsis thaliana
AT1G63230 1.0kb upstream 1.0kb upstream 1000 false Chr1: 23449654-23450653 Arabidopsis thaliana
AT1G63230 1.0kb downstream 1.0kb downstream 2658 true Chr1: 23450654-23453311 Arabidopsis thaliana
AT1G63230 1.0kb downstream 1.0kb downstream 1000 false Chr1: 23452312-23453311 Arabidopsis thaliana
AT1G63230 2.0kb upstream 2.0kb upstream 3658 true Chr1: 23448654-23452311 Arabidopsis thaliana
AT1G63230 2.0kb upstream 2.0kb upstream 2000 false Chr1: 23448654-23450653 Arabidopsis thaliana
AT1G63230 2.0kb downstream 2.0kb downstream 3658 true Chr1: 23450654-23454311 Arabidopsis thaliana
AT1G63230 2.0kb downstream 2.0kb downstream 2000 false Chr1: 23452312-23454311 Arabidopsis thaliana
AT1G63230 5.0kb upstream 5.0kb upstream 6658 true Chr1: 23445654-23452311 Arabidopsis thaliana
AT1G63230 5.0kb upstream 5.0kb upstream 5000 false Chr1: 23445654-23450653 Arabidopsis thaliana
AT1G63230 5.0kb downstream 5.0kb downstream 6658 true Chr1: 23450654-23457311 Arabidopsis thaliana
AT1G63230 5.0kb downstream 5.0kb downstream 5000 false Chr1: 23452312-23457311 Arabidopsis thaliana
AT1G63230 10.0kb upstream 10.0kb upstream 11658 true Chr1: 23440654-23452311 Arabidopsis thaliana
AT1G63230 10.0kb upstream 10.0kb upstream 10000 false Chr1: 23440654-23450653 Arabidopsis thaliana
AT1G63230 10.0kb downstream 10.0kb downstream 11658 true Chr1: 23450654-23462311 Arabidopsis thaliana
AT1G63230 10.0kb downstream 10.0kb downstream 10000 false Chr1: 23452312-23462311 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122331664 5261 Brassicaceae View MSA
123841919 5264 Brassicales-Malvales View MSA
124351712 5266 SBM View MSA
124254642 5268 Malvidae View MSA
124074430 5270 Rosid View MSA
123753756 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.454        
cufflinks 4.081        
cufflinks 1.299        
cufflinks 4.019        
cufflinks 1.181       Low
cufflinks 4.119        

0 Strain