Gene : AT1G62910 A. thaliana TAIR10
Defline:  (1 of 12) PTHR24015//PTHR24015:SF884 - FAMILY NOT NAMED // PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN Genomic Order:  5198
Name:  ? AT1G62910 Secondary Identifier:  ? PAC:19654911
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G62910 0.5kb upstream 0.5kb upstream 2402 true Chr1: 23298557-23300958 Arabidopsis thaliana
AT1G62910 0.5kb upstream 0.5kb upstream 500 false Chr1: 23298557-23299056 Arabidopsis thaliana
AT1G62910 0.5kb downstream 0.5kb downstream 2402 true Chr1: 23299057-23301458 Arabidopsis thaliana
AT1G62910 0.5kb downstream 0.5kb downstream 500 false Chr1: 23300959-23301458 Arabidopsis thaliana
AT1G62910 1.0kb upstream 1.0kb upstream 2902 true Chr1: 23298057-23300958 Arabidopsis thaliana
AT1G62910 1.0kb upstream 1.0kb upstream 1000 false Chr1: 23298057-23299056 Arabidopsis thaliana
AT1G62910 1.0kb downstream 1.0kb downstream 2902 true Chr1: 23299057-23301958 Arabidopsis thaliana
AT1G62910 1.0kb downstream 1.0kb downstream 1000 false Chr1: 23300959-23301958 Arabidopsis thaliana
AT1G62910 2.0kb upstream 2.0kb upstream 3902 true Chr1: 23297057-23300958 Arabidopsis thaliana
AT1G62910 2.0kb upstream 2.0kb upstream 2000 false Chr1: 23297057-23299056 Arabidopsis thaliana
AT1G62910 2.0kb downstream 2.0kb downstream 3902 true Chr1: 23299057-23302958 Arabidopsis thaliana
AT1G62910 2.0kb downstream 2.0kb downstream 2000 false Chr1: 23300959-23302958 Arabidopsis thaliana
AT1G62910 5.0kb upstream 5.0kb upstream 6902 true Chr1: 23294057-23300958 Arabidopsis thaliana
AT1G62910 5.0kb upstream 5.0kb upstream 5000 false Chr1: 23294057-23299056 Arabidopsis thaliana
AT1G62910 5.0kb downstream 5.0kb downstream 6902 true Chr1: 23299057-23305958 Arabidopsis thaliana
AT1G62910 5.0kb downstream 5.0kb downstream 5000 false Chr1: 23300959-23305958 Arabidopsis thaliana
AT1G62910 10.0kb upstream 10.0kb upstream 11902 true Chr1: 23289057-23300958 Arabidopsis thaliana
AT1G62910 10.0kb upstream 10.0kb upstream 10000 false Chr1: 23289057-23299056 Arabidopsis thaliana
AT1G62910 10.0kb downstream 10.0kb downstream 11902 true Chr1: 23299057-23310958 Arabidopsis thaliana
AT1G62910 10.0kb downstream 10.0kb downstream 10000 false Chr1: 23300959-23310958 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378647 5261 Brassicaceae View MSA
123841436 5264 Brassicales-Malvales View MSA
124350672 5266 SBM View MSA
124254642 5268 Malvidae View MSA
124074430 5270 Rosid View MSA
123753756 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.556       High
cufflinks 1.091        
cufflinks 1.26        
cufflinks 1.128        
cufflinks 1.015       Low
cufflinks 1.427        

0 Strain