Gene : AT1G56710 A. thaliana TAIR10
Defline:  (1 of 1) PTHR31375:SF13 - PECTIN LYASE-LIKE PROTEIN Genomic Order:  4736
Name:  ? AT1G56710 Secondary Identifier:  ? PAC:19654296
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-1081 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G56710 0.5kb upstream 0.5kb upstream 2426 true Chr1: 21258008-21260433 Arabidopsis thaliana
AT1G56710 0.5kb upstream 0.5kb upstream 500 false Chr1: 21259934-21260433 Arabidopsis thaliana
AT1G56710 0.5kb downstream 0.5kb downstream 2426 true Chr1: 21257508-21259933 Arabidopsis thaliana
AT1G56710 0.5kb downstream 0.5kb downstream 500 false Chr1: 21257508-21258007 Arabidopsis thaliana
AT1G56710 1.0kb upstream 1.0kb upstream 2926 true Chr1: 21258008-21260933 Arabidopsis thaliana
AT1G56710 1.0kb upstream 1.0kb upstream 1000 false Chr1: 21259934-21260933 Arabidopsis thaliana
AT1G56710 1.0kb downstream 1.0kb downstream 2926 true Chr1: 21257008-21259933 Arabidopsis thaliana
AT1G56710 1.0kb downstream 1.0kb downstream 1000 false Chr1: 21257008-21258007 Arabidopsis thaliana
AT1G56710 2.0kb upstream 2.0kb upstream 3926 true Chr1: 21258008-21261933 Arabidopsis thaliana
AT1G56710 2.0kb upstream 2.0kb upstream 2000 false Chr1: 21259934-21261933 Arabidopsis thaliana
AT1G56710 2.0kb downstream 2.0kb downstream 3926 true Chr1: 21256008-21259933 Arabidopsis thaliana
AT1G56710 2.0kb downstream 2.0kb downstream 2000 false Chr1: 21256008-21258007 Arabidopsis thaliana
AT1G56710 5.0kb upstream 5.0kb upstream 6926 true Chr1: 21258008-21264933 Arabidopsis thaliana
AT1G56710 5.0kb upstream 5.0kb upstream 5000 false Chr1: 21259934-21264933 Arabidopsis thaliana
AT1G56710 5.0kb downstream 5.0kb downstream 6926 true Chr1: 21253008-21259933 Arabidopsis thaliana
AT1G56710 5.0kb downstream 5.0kb downstream 5000 false Chr1: 21253008-21258007 Arabidopsis thaliana
AT1G56710 10.0kb upstream 10.0kb upstream 11926 true Chr1: 21258008-21269933 Arabidopsis thaliana
AT1G56710 10.0kb upstream 10.0kb upstream 10000 false Chr1: 21259934-21269933 Arabidopsis thaliana
AT1G56710 10.0kb downstream 10.0kb downstream 11926 true Chr1: 21248008-21259933 Arabidopsis thaliana
AT1G56710 10.0kb downstream 10.0kb downstream 10000 false Chr1: 21248008-21258007 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363483 5261 Brassicaceae View MSA
123840390 5264 Brassicales-Malvales View MSA
124322712 5266 SBM View MSA
124250647 5268 Malvidae View MSA
124071309 5270 Rosid View MSA
123746353 5271 Pentapetalae View MSA
122791695 5272 Eudicot View MSA
122048646 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.727        
cufflinks 0.016     Low Low
cufflinks 0.581        
cufflinks 0.02     Low Low
cufflinks 0.281        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain