Gene : AT1G56190 A. thaliana TAIR10
Defline:  (1 of 3) 2.7.2.3 - Phosphoglycerate kinase Genomic Order:  4682
Name:  ? AT1G56190 Secondary Identifier:  ? PAC:19650586
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Sequence Feature Displayer

Ontology Annotation Displayer

9 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana ANAEROFRUCAT-PWY Arabidopsis thaliana pathologic  
Athaliana ANAGLYCOLYSIS-PWY Arabidopsis thaliana pathologic  
Athaliana CALVIN-PWY Arabidopsis thaliana pathologic  
Athaliana GLUCONEO-PWY Arabidopsis thaliana pathologic  
Athaliana PHOTOALL-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-1042 Arabidopsis thaliana pathologic  
Athaliana PWY-5464 Arabidopsis thaliana pathologic  
Athaliana PWY66-399 Arabidopsis thaliana pathologic  
Athaliana SUCSYN-PWY Arabidopsis thaliana pathologic  

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G56190 0.5kb upstream 0.5kb upstream 2934 true Chr1: 21027716-21030649 Arabidopsis thaliana
AT1G56190 0.5kb upstream 0.5kb upstream 500 false Chr1: 21027716-21028215 Arabidopsis thaliana
AT1G56190 0.5kb downstream 0.5kb downstream 2934 true Chr1: 21028216-21031149 Arabidopsis thaliana
AT1G56190 0.5kb downstream 0.5kb downstream 500 false Chr1: 21030650-21031149 Arabidopsis thaliana
AT1G56190 1.0kb upstream 1.0kb upstream 3434 true Chr1: 21027216-21030649 Arabidopsis thaliana
AT1G56190 1.0kb upstream 1.0kb upstream 1000 false Chr1: 21027216-21028215 Arabidopsis thaliana
AT1G56190 1.0kb downstream 1.0kb downstream 3434 true Chr1: 21028216-21031649 Arabidopsis thaliana
AT1G56190 1.0kb downstream 1.0kb downstream 1000 false Chr1: 21030650-21031649 Arabidopsis thaliana
AT1G56190 2.0kb upstream 2.0kb upstream 4434 true Chr1: 21026216-21030649 Arabidopsis thaliana
AT1G56190 2.0kb upstream 2.0kb upstream 2000 false Chr1: 21026216-21028215 Arabidopsis thaliana
AT1G56190 2.0kb downstream 2.0kb downstream 4434 true Chr1: 21028216-21032649 Arabidopsis thaliana
AT1G56190 2.0kb downstream 2.0kb downstream 2000 false Chr1: 21030650-21032649 Arabidopsis thaliana
AT1G56190 5.0kb upstream 5.0kb upstream 7434 true Chr1: 21023216-21030649 Arabidopsis thaliana
AT1G56190 5.0kb upstream 5.0kb upstream 5000 false Chr1: 21023216-21028215 Arabidopsis thaliana
AT1G56190 5.0kb downstream 5.0kb downstream 7434 true Chr1: 21028216-21035649 Arabidopsis thaliana
AT1G56190 5.0kb downstream 5.0kb downstream 5000 false Chr1: 21030650-21035649 Arabidopsis thaliana
AT1G56190 10.0kb upstream 10.0kb upstream 12434 true Chr1: 21018216-21030649 Arabidopsis thaliana
AT1G56190 10.0kb upstream 10.0kb upstream 10000 false Chr1: 21018216-21028215 Arabidopsis thaliana
AT1G56190 10.0kb downstream 10.0kb downstream 12434 true Chr1: 21028216-21040649 Arabidopsis thaliana
AT1G56190 10.0kb downstream 10.0kb downstream 10000 false Chr1: 21030650-21040649 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122332138 5261 Brassicaceae View MSA
123773243 5264 Brassicales-Malvales View MSA
124347781 5266 SBM View MSA
124238345 5268 Malvidae View MSA
124066937 5270 Rosid View MSA
123738509 5271 Pentapetalae View MSA
122793227 5272 Eudicot View MSA
122042825 5273 Angiosperm View MSA
121348563 5274 Embryophyte View MSA
123423936 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 59.012     High High
cufflinks 6.036       Low
cufflinks 45.376     High  
cufflinks 7.243        
cufflinks 39.3     High  
cufflinks 8.0        

0 Strain