Gene : CAX6 A. thaliana TAIR10
Primary Identifier:  ? AT1G55720 Defline:  (1 of 13) PF01699 - Sodium/calcium exchanger protein (Na_Ca_ex)
Genomic Order:  4630 Name:  ? AT1G55720
Secondary Identifier:  ? PAC:19653137
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G55720 0.5kb upstream 0.5kb upstream 3023 true Chr1: 20828118-20831140 Arabidopsis thaliana
AT1G55720 0.5kb upstream 0.5kb upstream 500 false Chr1: 20830641-20831140 Arabidopsis thaliana
AT1G55720 0.5kb downstream 0.5kb downstream 3023 true Chr1: 20827618-20830640 Arabidopsis thaliana
AT1G55720 0.5kb downstream 0.5kb downstream 500 false Chr1: 20827618-20828117 Arabidopsis thaliana
AT1G55720 1.0kb upstream 1.0kb upstream 3523 true Chr1: 20828118-20831640 Arabidopsis thaliana
AT1G55720 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20830641-20831640 Arabidopsis thaliana
AT1G55720 1.0kb downstream 1.0kb downstream 3523 true Chr1: 20827118-20830640 Arabidopsis thaliana
AT1G55720 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20827118-20828117 Arabidopsis thaliana
AT1G55720 2.0kb upstream 2.0kb upstream 4523 true Chr1: 20828118-20832640 Arabidopsis thaliana
AT1G55720 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20830641-20832640 Arabidopsis thaliana
AT1G55720 2.0kb downstream 2.0kb downstream 4523 true Chr1: 20826118-20830640 Arabidopsis thaliana
AT1G55720 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20826118-20828117 Arabidopsis thaliana
AT1G55720 5.0kb upstream 5.0kb upstream 7523 true Chr1: 20828118-20835640 Arabidopsis thaliana
AT1G55720 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20830641-20835640 Arabidopsis thaliana
AT1G55720 5.0kb downstream 5.0kb downstream 7523 true Chr1: 20823118-20830640 Arabidopsis thaliana
AT1G55720 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20823118-20828117 Arabidopsis thaliana
AT1G55720 10.0kb upstream 10.0kb upstream 12523 true Chr1: 20828118-20840640 Arabidopsis thaliana
AT1G55720 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20830641-20840640 Arabidopsis thaliana
AT1G55720 10.0kb downstream 10.0kb downstream 12523 true Chr1: 20818118-20830640 Arabidopsis thaliana
AT1G55720 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20818118-20828117 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121502662 5273 Angiosperm View MSA
122343314 5261 Brassicaceae View MSA
123783555 5264 Brassicales-Malvales View MSA
124281781 5266 SBM View MSA
124136482 5268 Malvidae View MSA
123864334 5270 Rosid View MSA
123449654 5271 Pentapetalae View MSA
122485184 5272 Eudicot View MSA
120775969 5274 Embryophyte View MSA
123427763 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.126     Low Low
cufflinks 0.289     Low  
cufflinks 0.148     Low  
cufflinks 0.323     Low  
cufflinks 0.147     Low  
cufflinks 0.335     Low High

0 Strain