Gene : LAS A. thaliana TAIR10
Primary Identifier:  ? AT1G55580 Defline:  (1 of 1) PTHR31636:SF2 - SCARECROW-LIKE PROTEIN 18
Genomic Order:  4614 Name:  ? AT1G55580
Secondary Identifier:  ? PAC:19649278
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G55580 0.5kb upstream 0.5kb upstream 2242 true Chr1: 20763511-20765752 Arabidopsis thaliana
AT1G55580 0.5kb upstream 0.5kb upstream 500 false Chr1: 20763511-20764010 Arabidopsis thaliana
AT1G55580 0.5kb downstream 0.5kb downstream 2242 true Chr1: 20764011-20766252 Arabidopsis thaliana
AT1G55580 0.5kb downstream 0.5kb downstream 500 false Chr1: 20765753-20766252 Arabidopsis thaliana
AT1G55580 1.0kb upstream 1.0kb upstream 2742 true Chr1: 20763011-20765752 Arabidopsis thaliana
AT1G55580 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20763011-20764010 Arabidopsis thaliana
AT1G55580 1.0kb downstream 1.0kb downstream 2742 true Chr1: 20764011-20766752 Arabidopsis thaliana
AT1G55580 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20765753-20766752 Arabidopsis thaliana
AT1G55580 2.0kb upstream 2.0kb upstream 3742 true Chr1: 20762011-20765752 Arabidopsis thaliana
AT1G55580 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20762011-20764010 Arabidopsis thaliana
AT1G55580 2.0kb downstream 2.0kb downstream 3742 true Chr1: 20764011-20767752 Arabidopsis thaliana
AT1G55580 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20765753-20767752 Arabidopsis thaliana
AT1G55580 5.0kb upstream 5.0kb upstream 6742 true Chr1: 20759011-20765752 Arabidopsis thaliana
AT1G55580 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20759011-20764010 Arabidopsis thaliana
AT1G55580 5.0kb downstream 5.0kb downstream 6742 true Chr1: 20764011-20770752 Arabidopsis thaliana
AT1G55580 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20765753-20770752 Arabidopsis thaliana
AT1G55580 10.0kb upstream 10.0kb upstream 11742 true Chr1: 20754011-20765752 Arabidopsis thaliana
AT1G55580 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20754011-20764010 Arabidopsis thaliana
AT1G55580 10.0kb downstream 10.0kb downstream 11742 true Chr1: 20764011-20775752 Arabidopsis thaliana
AT1G55580 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20765753-20775752 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361733 5261 Brassicaceae View MSA
123832750 5264 Brassicales-Malvales View MSA
124344585 5266 SBM View MSA
124248059 5268 Malvidae View MSA
124068320 5270 Rosid View MSA
123745954 5271 Pentapetalae View MSA
122792693 5272 Eudicot View MSA
122041925 5273 Angiosperm View MSA
121350442 5274 Embryophyte View MSA
123381734 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.017     Low  
cufflinks 0.408        
cufflinks 0.008     Low Low
cufflinks 1.026       High
cufflinks 0.016     Low  
cufflinks 0.595        

0 Strain