Gene : AT1G55800 A. thaliana TAIR10
Defline:  (1 of 1) PTHR11538//PTHR11538:SF43 - PHENYLALANYL-TRNA SYNTHETASE // SUBFAMILY NOT NAMED Genomic Order:  4637
Name:  ? AT1G55800 Secondary Identifier:  ? PAC:19650553
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G55800 0.5kb upstream 0.5kb upstream 1814 true Chr1: 20856922-20858735 Arabidopsis thaliana
AT1G55800 0.5kb upstream 0.5kb upstream 500 false Chr1: 20858236-20858735 Arabidopsis thaliana
AT1G55800 0.5kb downstream 0.5kb downstream 1814 true Chr1: 20856422-20858235 Arabidopsis thaliana
AT1G55800 0.5kb downstream 0.5kb downstream 500 false Chr1: 20856422-20856921 Arabidopsis thaliana
AT1G55800 1.0kb upstream 1.0kb upstream 2314 true Chr1: 20856922-20859235 Arabidopsis thaliana
AT1G55800 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20858236-20859235 Arabidopsis thaliana
AT1G55800 1.0kb downstream 1.0kb downstream 2314 true Chr1: 20855922-20858235 Arabidopsis thaliana
AT1G55800 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20855922-20856921 Arabidopsis thaliana
AT1G55800 2.0kb upstream 2.0kb upstream 3314 true Chr1: 20856922-20860235 Arabidopsis thaliana
AT1G55800 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20858236-20860235 Arabidopsis thaliana
AT1G55800 2.0kb downstream 2.0kb downstream 3314 true Chr1: 20854922-20858235 Arabidopsis thaliana
AT1G55800 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20854922-20856921 Arabidopsis thaliana
AT1G55800 5.0kb upstream 5.0kb upstream 6314 true Chr1: 20856922-20863235 Arabidopsis thaliana
AT1G55800 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20858236-20863235 Arabidopsis thaliana
AT1G55800 5.0kb downstream 5.0kb downstream 6314 true Chr1: 20851922-20858235 Arabidopsis thaliana
AT1G55800 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20851922-20856921 Arabidopsis thaliana
AT1G55800 10.0kb upstream 10.0kb upstream 11314 true Chr1: 20856922-20868235 Arabidopsis thaliana
AT1G55800 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20858236-20868235 Arabidopsis thaliana
AT1G55800 10.0kb downstream 10.0kb downstream 11314 true Chr1: 20846922-20858235 Arabidopsis thaliana
AT1G55800 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20846922-20856921 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029703 5273 Angiosperm View MSA
122328446 5261 Brassicaceae Singleton cluster - no MSA
123769801 5264 Brassicales-Malvales Singleton cluster - no MSA
124268352 5266 SBM Singleton cluster - no MSA
124124560 5268 Malvidae Singleton cluster - no MSA
123853586 5270 Rosid Singleton cluster - no MSA
123750465 5271 Pentapetalae View MSA
122797518 5272 Eudicot View MSA
121349631 5274 Embryophyte View MSA
123425246 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.197     Low  
cufflinks 0.75        
cufflinks 0.201     Low  
cufflinks 0.921       High
cufflinks 0.149     Low Low
cufflinks 0.845        

0 Strain