Gene : PRP1 A. thaliana TAIR10
Primary Identifier:  ? AT1G54970 Defline:  (1 of 4) PTHR33470//PTHR33470:SF1 - FAMILY NOT NAMED // POLLEN OLE E 1 ALLERGEN AND EXTENSIN FAMILY PROTEIN
Genomic Order:  4546 Name:  ? AT1G54970
Secondary Identifier:  ? PAC:19651754
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0 Pathways

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G54970 0.5kb upstream 0.5kb upstream 1989 true Chr1: 20504500-20506488 Arabidopsis thaliana
AT1G54970 0.5kb upstream 0.5kb upstream 500 false Chr1: 20504500-20504999 Arabidopsis thaliana
AT1G54970 0.5kb downstream 0.5kb downstream 1989 true Chr1: 20505000-20506988 Arabidopsis thaliana
AT1G54970 0.5kb downstream 0.5kb downstream 500 false Chr1: 20506489-20506988 Arabidopsis thaliana
AT1G54970 1.0kb upstream 1.0kb upstream 2489 true Chr1: 20504000-20506488 Arabidopsis thaliana
AT1G54970 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20504000-20504999 Arabidopsis thaliana
AT1G54970 1.0kb downstream 1.0kb downstream 2489 true Chr1: 20505000-20507488 Arabidopsis thaliana
AT1G54970 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20506489-20507488 Arabidopsis thaliana
AT1G54970 2.0kb upstream 2.0kb upstream 3489 true Chr1: 20503000-20506488 Arabidopsis thaliana
AT1G54970 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20503000-20504999 Arabidopsis thaliana
AT1G54970 2.0kb downstream 2.0kb downstream 3489 true Chr1: 20505000-20508488 Arabidopsis thaliana
AT1G54970 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20506489-20508488 Arabidopsis thaliana
AT1G54970 5.0kb upstream 5.0kb upstream 6489 true Chr1: 20500000-20506488 Arabidopsis thaliana
AT1G54970 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20500000-20504999 Arabidopsis thaliana
AT1G54970 5.0kb downstream 5.0kb downstream 6489 true Chr1: 20505000-20511488 Arabidopsis thaliana
AT1G54970 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20506489-20511488 Arabidopsis thaliana
AT1G54970 10.0kb upstream 10.0kb upstream 11489 true Chr1: 20495000-20506488 Arabidopsis thaliana
AT1G54970 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20495000-20504999 Arabidopsis thaliana
AT1G54970 10.0kb downstream 10.0kb downstream 11489 true Chr1: 20505000-20516488 Arabidopsis thaliana
AT1G54970 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20506489-20516488 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377113 5261 Brassicaceae View MSA
123839487 5264 Brassicales-Malvales View MSA
124322614 5266 SBM View MSA
124254675 5268 Malvidae View MSA
124065912 5270 Rosid View MSA
123753028 5271 Pentapetalae View MSA
122796591 5272 Eudicot View MSA
122051631 5273 Angiosperm View MSA
121349317 5274 Embryophyte View MSA
123381274 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.01     Low Low
cufflinks 0.031     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.141     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.988       High

0 Strain