Gene : TLP18.3 A. thaliana TAIR10
Primary Identifier:  ? AT1G54780 Defline:  (1 of 1) PTHR30373:SF2 - UPF0603 PROTEIN YGCG
Genomic Order:  4531 Name:  ? AT1G54780
Secondary Identifier:  ? PAC:19652836
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5083 Arabidopsis thaliana pathologic  
Athaliana PWY-6348 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G54780 0.5kb upstream 0.5kb upstream 2226 true Chr1: 20438934-20441159 Arabidopsis thaliana
AT1G54780 0.5kb upstream 0.5kb upstream 500 false Chr1: 20438934-20439433 Arabidopsis thaliana
AT1G54780 0.5kb downstream 0.5kb downstream 2226 true Chr1: 20439434-20441659 Arabidopsis thaliana
AT1G54780 0.5kb downstream 0.5kb downstream 500 false Chr1: 20441160-20441659 Arabidopsis thaliana
AT1G54780 1.0kb upstream 1.0kb upstream 2726 true Chr1: 20438434-20441159 Arabidopsis thaliana
AT1G54780 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20438434-20439433 Arabidopsis thaliana
AT1G54780 1.0kb downstream 1.0kb downstream 2726 true Chr1: 20439434-20442159 Arabidopsis thaliana
AT1G54780 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20441160-20442159 Arabidopsis thaliana
AT1G54780 2.0kb upstream 2.0kb upstream 3726 true Chr1: 20437434-20441159 Arabidopsis thaliana
AT1G54780 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20437434-20439433 Arabidopsis thaliana
AT1G54780 2.0kb downstream 2.0kb downstream 3726 true Chr1: 20439434-20443159 Arabidopsis thaliana
AT1G54780 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20441160-20443159 Arabidopsis thaliana
AT1G54780 5.0kb upstream 5.0kb upstream 6726 true Chr1: 20434434-20441159 Arabidopsis thaliana
AT1G54780 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20434434-20439433 Arabidopsis thaliana
AT1G54780 5.0kb downstream 5.0kb downstream 6726 true Chr1: 20439434-20446159 Arabidopsis thaliana
AT1G54780 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20441160-20446159 Arabidopsis thaliana
AT1G54780 10.0kb upstream 10.0kb upstream 11726 true Chr1: 20429434-20441159 Arabidopsis thaliana
AT1G54780 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20429434-20439433 Arabidopsis thaliana
AT1G54780 10.0kb downstream 10.0kb downstream 11726 true Chr1: 20439434-20451159 Arabidopsis thaliana
AT1G54780 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20441160-20451159 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362877 5261 Brassicaceae View MSA
123830968 5264 Brassicales-Malvales View MSA
124342350 5266 SBM View MSA
124243217 5268 Malvidae View MSA
124061871 5270 Rosid View MSA
123737495 5271 Pentapetalae View MSA
122787639 5272 Eudicot View MSA
122046154 5273 Angiosperm View MSA
121349050 5274 Embryophyte View MSA
123424307 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 178.968     High  
cufflinks 0.96        
cufflinks 188.989     High  
cufflinks 1.483        
cufflinks 186.197     High  
cufflinks 0.403       Low

0 Strain