Gene : AT1G54840 A. thaliana TAIR10
Defline:  (1 of 2) PTHR34661//PTHR34661:SF3 - FAMILY NOT NAMED // ALPHA-CRYSTALLIN DOMAIN OF HEAT SHOCK PROTEIN-CONTAINING PROTEIN Genomic Order:  4535
Name:  ? AT1G54840 Secondary Identifier:  ? PAC:19657761
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G54840 0.5kb upstream 0.5kb upstream 2157 true Chr1: 20452593-20454749 Arabidopsis thaliana
AT1G54840 0.5kb upstream 0.5kb upstream 500 false Chr1: 20454250-20454749 Arabidopsis thaliana
AT1G54840 0.5kb downstream 0.5kb downstream 2157 true Chr1: 20452093-20454249 Arabidopsis thaliana
AT1G54840 0.5kb downstream 0.5kb downstream 500 false Chr1: 20452093-20452592 Arabidopsis thaliana
AT1G54840 1.0kb upstream 1.0kb upstream 2657 true Chr1: 20452593-20455249 Arabidopsis thaliana
AT1G54840 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20454250-20455249 Arabidopsis thaliana
AT1G54840 1.0kb downstream 1.0kb downstream 2657 true Chr1: 20451593-20454249 Arabidopsis thaliana
AT1G54840 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20451593-20452592 Arabidopsis thaliana
AT1G54840 2.0kb upstream 2.0kb upstream 3657 true Chr1: 20452593-20456249 Arabidopsis thaliana
AT1G54840 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20454250-20456249 Arabidopsis thaliana
AT1G54840 2.0kb downstream 2.0kb downstream 3657 true Chr1: 20450593-20454249 Arabidopsis thaliana
AT1G54840 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20450593-20452592 Arabidopsis thaliana
AT1G54840 5.0kb upstream 5.0kb upstream 6657 true Chr1: 20452593-20459249 Arabidopsis thaliana
AT1G54840 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20454250-20459249 Arabidopsis thaliana
AT1G54840 5.0kb downstream 5.0kb downstream 6657 true Chr1: 20447593-20454249 Arabidopsis thaliana
AT1G54840 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20447593-20452592 Arabidopsis thaliana
AT1G54840 10.0kb upstream 10.0kb upstream 11657 true Chr1: 20452593-20464249 Arabidopsis thaliana
AT1G54840 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20454250-20464249 Arabidopsis thaliana
AT1G54840 10.0kb downstream 10.0kb downstream 11657 true Chr1: 20442593-20454249 Arabidopsis thaliana
AT1G54840 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20442593-20452592 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372578 5261 Brassicaceae View MSA
123836985 5264 Brassicales-Malvales View MSA
124350302 5266 SBM View MSA
124250323 5268 Malvidae View MSA
124074310 5270 Rosid View MSA
123751174 5271 Pentapetalae View MSA
122794254 5272 Eudicot View MSA
122044851 5273 Angiosperm View MSA
121347448 5274 Embryophyte View MSA
123380555 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.217     Low  
cufflinks 1.307        
cufflinks 0.153     Low  
cufflinks 1.376        
cufflinks 0.112     Low Low
cufflinks 1.286        

0 Strain