Gene : AT1G54520 A. thaliana TAIR10
Defline:  (1 of 2) PF07466 - Protein of unknown function (DUF1517) (DUF1517) Genomic Order:  4507
Name:  ? AT1G54520 Secondary Identifier:  ? PAC:19658018
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G54520 0.5kb upstream 0.5kb upstream 3114 true Chr1: 20362948-20366061 Arabidopsis thaliana
AT1G54520 0.5kb upstream 0.5kb upstream 500 false Chr1: 20362948-20363447 Arabidopsis thaliana
AT1G54520 0.5kb downstream 0.5kb downstream 3114 true Chr1: 20363448-20366561 Arabidopsis thaliana
AT1G54520 0.5kb downstream 0.5kb downstream 500 false Chr1: 20366062-20366561 Arabidopsis thaliana
AT1G54520 1.0kb upstream 1.0kb upstream 3614 true Chr1: 20362448-20366061 Arabidopsis thaliana
AT1G54520 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20362448-20363447 Arabidopsis thaliana
AT1G54520 1.0kb downstream 1.0kb downstream 3614 true Chr1: 20363448-20367061 Arabidopsis thaliana
AT1G54520 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20366062-20367061 Arabidopsis thaliana
AT1G54520 2.0kb upstream 2.0kb upstream 4614 true Chr1: 20361448-20366061 Arabidopsis thaliana
AT1G54520 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20361448-20363447 Arabidopsis thaliana
AT1G54520 2.0kb downstream 2.0kb downstream 4614 true Chr1: 20363448-20368061 Arabidopsis thaliana
AT1G54520 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20366062-20368061 Arabidopsis thaliana
AT1G54520 5.0kb upstream 5.0kb upstream 7614 true Chr1: 20358448-20366061 Arabidopsis thaliana
AT1G54520 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20358448-20363447 Arabidopsis thaliana
AT1G54520 5.0kb downstream 5.0kb downstream 7614 true Chr1: 20363448-20371061 Arabidopsis thaliana
AT1G54520 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20366062-20371061 Arabidopsis thaliana
AT1G54520 10.0kb upstream 10.0kb upstream 12614 true Chr1: 20353448-20366061 Arabidopsis thaliana
AT1G54520 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20353448-20363447 Arabidopsis thaliana
AT1G54520 10.0kb downstream 10.0kb downstream 12614 true Chr1: 20363448-20376061 Arabidopsis thaliana
AT1G54520 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20366062-20376061 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365376 5261 Brassicaceae View MSA
123838747 5264 Brassicales-Malvales View MSA
124339106 5266 SBM View MSA
124238465 5268 Malvidae View MSA
124064193 5270 Rosid View MSA
123753168 5271 Pentapetalae View MSA
122797906 5272 Eudicot View MSA
122042227 5273 Angiosperm View MSA
123429152 5275 Viridiplantae View MSA
121348826 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 46.955     High  
cufflinks 6.072        
cufflinks 43.425     High  
cufflinks 7.214        
cufflinks 42.989     High  
cufflinks 6.504        

0 Strain