Gene : AT1G54230 A. thaliana TAIR10
Defline:  Winged helix-turn-helix transcription repressor DNA-binding Genomic Order:  4478
Name:  ? AT1G54230 Secondary Identifier:  ? PAC:19656815
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G54230 0.5kb upstream 0.5kb upstream 2348 true Chr1: 20250018-20252365 Arabidopsis thaliana
AT1G54230 0.5kb upstream 0.5kb upstream 500 false Chr1: 20250018-20250517 Arabidopsis thaliana
AT1G54230 0.5kb downstream 0.5kb downstream 2348 true Chr1: 20250518-20252865 Arabidopsis thaliana
AT1G54230 0.5kb downstream 0.5kb downstream 500 false Chr1: 20252366-20252865 Arabidopsis thaliana
AT1G54230 1.0kb upstream 1.0kb upstream 2848 true Chr1: 20249518-20252365 Arabidopsis thaliana
AT1G54230 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20249518-20250517 Arabidopsis thaliana
AT1G54230 1.0kb downstream 1.0kb downstream 2848 true Chr1: 20250518-20253365 Arabidopsis thaliana
AT1G54230 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20252366-20253365 Arabidopsis thaliana
AT1G54230 2.0kb upstream 2.0kb upstream 3848 true Chr1: 20248518-20252365 Arabidopsis thaliana
AT1G54230 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20248518-20250517 Arabidopsis thaliana
AT1G54230 2.0kb downstream 2.0kb downstream 3848 true Chr1: 20250518-20254365 Arabidopsis thaliana
AT1G54230 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20252366-20254365 Arabidopsis thaliana
AT1G54230 5.0kb upstream 5.0kb upstream 6848 true Chr1: 20245518-20252365 Arabidopsis thaliana
AT1G54230 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20245518-20250517 Arabidopsis thaliana
AT1G54230 5.0kb downstream 5.0kb downstream 6848 true Chr1: 20250518-20257365 Arabidopsis thaliana
AT1G54230 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20252366-20257365 Arabidopsis thaliana
AT1G54230 10.0kb upstream 10.0kb upstream 11848 true Chr1: 20240518-20252365 Arabidopsis thaliana
AT1G54230 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20240518-20250517 Arabidopsis thaliana
AT1G54230 10.0kb downstream 10.0kb downstream 11848 true Chr1: 20250518-20262365 Arabidopsis thaliana
AT1G54230 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20252366-20262365 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121780140 5273 Angiosperm View MSA
122343628 5261 Brassicaceae View MSA
123783770 5264 Brassicales-Malvales View MSA
124281984 5266 SBM View MSA
124136648 5268 Malvidae View MSA
123864476 5270 Rosid View MSA
123745249 5271 Pentapetalae View MSA
122771423 5272 Eudicot View MSA
121051766 5274 Embryophyte View MSA
123091841 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.008     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain