Gene : GLIP3 A. thaliana TAIR10
Primary Identifier:  ? AT1G53990 Defline:  (1 of 4) PTHR22835//PTHR22835:SF174 - ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN // GDSL ESTERASE/LIPASE 1-RELATED
Genomic Order:  4451 Name:  ? AT1G53990
Secondary Identifier:  ? PAC:19656013
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-6303 Arabidopsis thaliana pathologic  

Genomics

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Gene Structure Displayer

Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G53990 0.5kb upstream 0.5kb upstream 2237 true Chr1: 20150516-20152752 Arabidopsis thaliana
AT1G53990 0.5kb upstream 0.5kb upstream 500 false Chr1: 20150516-20151015 Arabidopsis thaliana
AT1G53990 0.5kb downstream 0.5kb downstream 2237 true Chr1: 20151016-20153252 Arabidopsis thaliana
AT1G53990 0.5kb downstream 0.5kb downstream 500 false Chr1: 20152753-20153252 Arabidopsis thaliana
AT1G53990 1.0kb upstream 1.0kb upstream 2737 true Chr1: 20150016-20152752 Arabidopsis thaliana
AT1G53990 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20150016-20151015 Arabidopsis thaliana
AT1G53990 1.0kb downstream 1.0kb downstream 2737 true Chr1: 20151016-20153752 Arabidopsis thaliana
AT1G53990 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20152753-20153752 Arabidopsis thaliana
AT1G53990 2.0kb upstream 2.0kb upstream 3737 true Chr1: 20149016-20152752 Arabidopsis thaliana
AT1G53990 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20149016-20151015 Arabidopsis thaliana
AT1G53990 2.0kb downstream 2.0kb downstream 3737 true Chr1: 20151016-20154752 Arabidopsis thaliana
AT1G53990 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20152753-20154752 Arabidopsis thaliana
AT1G53990 5.0kb upstream 5.0kb upstream 6737 true Chr1: 20146016-20152752 Arabidopsis thaliana
AT1G53990 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20146016-20151015 Arabidopsis thaliana
AT1G53990 5.0kb downstream 5.0kb downstream 6737 true Chr1: 20151016-20157752 Arabidopsis thaliana
AT1G53990 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20152753-20157752 Arabidopsis thaliana
AT1G53990 10.0kb upstream 10.0kb upstream 11737 true Chr1: 20141016-20152752 Arabidopsis thaliana
AT1G53990 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20141016-20151015 Arabidopsis thaliana
AT1G53990 10.0kb downstream 10.0kb downstream 11737 true Chr1: 20151016-20162752 Arabidopsis thaliana
AT1G53990 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20152753-20162752 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371746 5261 Brassicaceae View MSA
123841664 5264 Brassicales-Malvales View MSA
124349446 5266 SBM View MSA
124250380 5268 Malvidae View MSA
124074404 5270 Rosid View MSA
123753785 5271 Pentapetalae View MSA
122797352 5272 Eudicot View MSA
122051674 5273 Angiosperm View MSA
121351762 5274 Embryophyte View MSA
123428079 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.063     Low  
cufflinks 1.252        
cufflinks 0.045     Low  
cufflinks 2.772       High
cufflinks 0.056     Low  
cufflinks 1.358        

0 Strain