Gene : AT1G71280 A. thaliana TAIR10
Defline:  (1 of 3) K14809 - ATP-dependent RNA helicase DDX55/SPB4 [EC:3.6.4.13] (DDX55, SPB4) Genomic Order:  6093
Name:  ? AT1G71280 Secondary Identifier:  ? PAC:19649366
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G71280 0.5kb upstream 0.5kb upstream 2512 true Chr1: 26870141-26872652 Arabidopsis thaliana
AT1G71280 0.5kb upstream 0.5kb upstream 500 false Chr1: 26872153-26872652 Arabidopsis thaliana
AT1G71280 0.5kb downstream 0.5kb downstream 2512 true Chr1: 26869641-26872152 Arabidopsis thaliana
AT1G71280 0.5kb downstream 0.5kb downstream 500 false Chr1: 26869641-26870140 Arabidopsis thaliana
AT1G71280 1.0kb upstream 1.0kb upstream 3012 true Chr1: 26870141-26873152 Arabidopsis thaliana
AT1G71280 1.0kb upstream 1.0kb upstream 1000 false Chr1: 26872153-26873152 Arabidopsis thaliana
AT1G71280 1.0kb downstream 1.0kb downstream 3012 true Chr1: 26869141-26872152 Arabidopsis thaliana
AT1G71280 1.0kb downstream 1.0kb downstream 1000 false Chr1: 26869141-26870140 Arabidopsis thaliana
AT1G71280 2.0kb upstream 2.0kb upstream 4012 true Chr1: 26870141-26874152 Arabidopsis thaliana
AT1G71280 2.0kb upstream 2.0kb upstream 2000 false Chr1: 26872153-26874152 Arabidopsis thaliana
AT1G71280 2.0kb downstream 2.0kb downstream 4012 true Chr1: 26868141-26872152 Arabidopsis thaliana
AT1G71280 2.0kb downstream 2.0kb downstream 2000 false Chr1: 26868141-26870140 Arabidopsis thaliana
AT1G71280 5.0kb upstream 5.0kb upstream 7012 true Chr1: 26870141-26877152 Arabidopsis thaliana
AT1G71280 5.0kb upstream 5.0kb upstream 5000 false Chr1: 26872153-26877152 Arabidopsis thaliana
AT1G71280 5.0kb downstream 5.0kb downstream 7012 true Chr1: 26865141-26872152 Arabidopsis thaliana
AT1G71280 5.0kb downstream 5.0kb downstream 5000 false Chr1: 26865141-26870140 Arabidopsis thaliana
AT1G71280 10.0kb upstream 10.0kb upstream 12012 true Chr1: 26870141-26882152 Arabidopsis thaliana
AT1G71280 10.0kb upstream 10.0kb upstream 10000 false Chr1: 26872153-26882152 Arabidopsis thaliana
AT1G71280 10.0kb downstream 10.0kb downstream 12012 true Chr1: 26860141-26872152 Arabidopsis thaliana
AT1G71280 10.0kb downstream 10.0kb downstream 10000 false Chr1: 26860141-26870140 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122328351 5261 Brassicaceae Singleton cluster - no MSA
123769710 5264 Brassicales-Malvales Singleton cluster - no MSA
124268263 5266 SBM Singleton cluster - no MSA
124247868 5268 Malvidae View MSA
123952200 5270 Rosid View MSA
123530070 5271 Pentapetalae View MSA
122565048 5272 Eudicot View MSA
122051430 5273 Angiosperm View MSA
123429160 5275 Viridiplantae View MSA
121312486 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.029     Low Low
cufflinks 0.105     Low  
cufflinks 0.171     Low  
cufflinks 0.21     Low  
cufflinks 0.196     Low  
cufflinks 0.14     Low  

0 Strain