Gene : AT1G68490 A. thaliana TAIR10
Defline:  (1 of 5) 1.1.1.85 - 3-isopropylmalate dehydrogenase / IMDH Genomic Order:  5797
Name:  ? AT1G68490 Secondary Identifier:  ? PAC:19651292
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana BRANCHED-CHAIN-AA-SYN-PWY Arabidopsis thaliana pathologic  
Athaliana LEUSYN-PWY Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G68490 0.5kb upstream 0.5kb upstream 2528 true Chr1: 25692949-25695476 Arabidopsis thaliana
AT1G68490 0.5kb upstream 0.5kb upstream 500 false Chr1: 25692949-25693448 Arabidopsis thaliana
AT1G68490 0.5kb downstream 0.5kb downstream 2528 true Chr1: 25693449-25695976 Arabidopsis thaliana
AT1G68490 0.5kb downstream 0.5kb downstream 500 false Chr1: 25695477-25695976 Arabidopsis thaliana
AT1G68490 1.0kb upstream 1.0kb upstream 3028 true Chr1: 25692449-25695476 Arabidopsis thaliana
AT1G68490 1.0kb upstream 1.0kb upstream 1000 false Chr1: 25692449-25693448 Arabidopsis thaliana
AT1G68490 1.0kb downstream 1.0kb downstream 3028 true Chr1: 25693449-25696476 Arabidopsis thaliana
AT1G68490 1.0kb downstream 1.0kb downstream 1000 false Chr1: 25695477-25696476 Arabidopsis thaliana
AT1G68490 2.0kb upstream 2.0kb upstream 4028 true Chr1: 25691449-25695476 Arabidopsis thaliana
AT1G68490 2.0kb upstream 2.0kb upstream 2000 false Chr1: 25691449-25693448 Arabidopsis thaliana
AT1G68490 2.0kb downstream 2.0kb downstream 4028 true Chr1: 25693449-25697476 Arabidopsis thaliana
AT1G68490 2.0kb downstream 2.0kb downstream 2000 false Chr1: 25695477-25697476 Arabidopsis thaliana
AT1G68490 5.0kb upstream 5.0kb upstream 7028 true Chr1: 25688449-25695476 Arabidopsis thaliana
AT1G68490 5.0kb upstream 5.0kb upstream 5000 false Chr1: 25688449-25693448 Arabidopsis thaliana
AT1G68490 5.0kb downstream 5.0kb downstream 7028 true Chr1: 25693449-25700476 Arabidopsis thaliana
AT1G68490 5.0kb downstream 5.0kb downstream 5000 false Chr1: 25695477-25700476 Arabidopsis thaliana
AT1G68490 10.0kb upstream 10.0kb upstream 12028 true Chr1: 25683449-25695476 Arabidopsis thaliana
AT1G68490 10.0kb upstream 10.0kb upstream 10000 false Chr1: 25683449-25693448 Arabidopsis thaliana
AT1G68490 10.0kb downstream 10.0kb downstream 12028 true Chr1: 25693449-25705476 Arabidopsis thaliana
AT1G68490 10.0kb downstream 10.0kb downstream 10000 false Chr1: 25695477-25705476 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364246 5261 Brassicaceae View MSA
123840098 5264 Brassicales-Malvales View MSA
124351178 5266 SBM View MSA
124253391 5268 Malvidae View MSA
124066987 5270 Rosid View MSA
123746381 5271 Pentapetalae View MSA
122789190 5272 Eudicot View MSA
122049029 5273 Angiosperm View MSA
121350987 5274 Embryophyte View MSA
123381959 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.724        
cufflinks 22.759        
cufflinks 15.103       Low
cufflinks 27.397       High
cufflinks 16.64        
cufflinks 20.7        

0 Strain