Gene : AT1G66500 A. thaliana TAIR10
Defline:  (1 of 4) K14400 - pre-mRNA cleavage complex 2 protein Pcf11 (PCF11) Genomic Order:  5586
Name:  ? AT1G66500 Secondary Identifier:  ? PAC:19650453
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G66500 0.5kb upstream 0.5kb upstream 2002 true Chr1: 24811149-24813150 Arabidopsis thaliana
AT1G66500 0.5kb upstream 0.5kb upstream 500 false Chr1: 24812651-24813150 Arabidopsis thaliana
AT1G66500 0.5kb downstream 0.5kb downstream 2002 true Chr1: 24810649-24812650 Arabidopsis thaliana
AT1G66500 0.5kb downstream 0.5kb downstream 500 false Chr1: 24810649-24811148 Arabidopsis thaliana
AT1G66500 1.0kb upstream 1.0kb upstream 2502 true Chr1: 24811149-24813650 Arabidopsis thaliana
AT1G66500 1.0kb upstream 1.0kb upstream 1000 false Chr1: 24812651-24813650 Arabidopsis thaliana
AT1G66500 1.0kb downstream 1.0kb downstream 2502 true Chr1: 24810149-24812650 Arabidopsis thaliana
AT1G66500 1.0kb downstream 1.0kb downstream 1000 false Chr1: 24810149-24811148 Arabidopsis thaliana
AT1G66500 2.0kb upstream 2.0kb upstream 3502 true Chr1: 24811149-24814650 Arabidopsis thaliana
AT1G66500 2.0kb upstream 2.0kb upstream 2000 false Chr1: 24812651-24814650 Arabidopsis thaliana
AT1G66500 2.0kb downstream 2.0kb downstream 3502 true Chr1: 24809149-24812650 Arabidopsis thaliana
AT1G66500 2.0kb downstream 2.0kb downstream 2000 false Chr1: 24809149-24811148 Arabidopsis thaliana
AT1G66500 5.0kb upstream 5.0kb upstream 6502 true Chr1: 24811149-24817650 Arabidopsis thaliana
AT1G66500 5.0kb upstream 5.0kb upstream 5000 false Chr1: 24812651-24817650 Arabidopsis thaliana
AT1G66500 5.0kb downstream 5.0kb downstream 6502 true Chr1: 24806149-24812650 Arabidopsis thaliana
AT1G66500 5.0kb downstream 5.0kb downstream 5000 false Chr1: 24806149-24811148 Arabidopsis thaliana
AT1G66500 10.0kb upstream 10.0kb upstream 11502 true Chr1: 24811149-24822650 Arabidopsis thaliana
AT1G66500 10.0kb upstream 10.0kb upstream 10000 false Chr1: 24812651-24822650 Arabidopsis thaliana
AT1G66500 10.0kb downstream 10.0kb downstream 11502 true Chr1: 24801149-24812650 Arabidopsis thaliana
AT1G66500 10.0kb downstream 10.0kb downstream 10000 false Chr1: 24801149-24811148 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027227 5273 Angiosperm View MSA
122377786 5261 Brassicaceae View MSA
123839951 5264 Brassicales-Malvales View MSA
124322667 5266 SBM View MSA
124169194 5268 Malvidae View MSA
124037233 5270 Rosid View MSA
123747858 5271 Pentapetalae View MSA
122772338 5272 Eudicot View MSA
121296913 5274 Embryophyte View MSA
123426332 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.566        
cufflinks 126.128     High  
cufflinks 7.191        
cufflinks 94.596     High  
cufflinks 2.871       Low
cufflinks 113.148     High  

0 Strain