Gene : AT2G25355 A. thaliana TAIR10
Defline:  (1 of 2) K03681 - exosome complex component RRP40 (RRP40, EXOSC3) Genomic Order:  1809
Name:  ? AT2G25355 Secondary Identifier:  ? PAC:19641147
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G25355 0.5kb upstream 0.5kb upstream 2945 true Chr2: 10800778-10803722 Arabidopsis thaliana
AT2G25355 0.5kb upstream 0.5kb upstream 500 false Chr2: 10800778-10801277 Arabidopsis thaliana
AT2G25355 0.5kb downstream 0.5kb downstream 2945 true Chr2: 10801278-10804222 Arabidopsis thaliana
AT2G25355 0.5kb downstream 0.5kb downstream 500 false Chr2: 10803723-10804222 Arabidopsis thaliana
AT2G25355 1.0kb upstream 1.0kb upstream 3445 true Chr2: 10800278-10803722 Arabidopsis thaliana
AT2G25355 1.0kb upstream 1.0kb upstream 1000 false Chr2: 10800278-10801277 Arabidopsis thaliana
AT2G25355 1.0kb downstream 1.0kb downstream 3445 true Chr2: 10801278-10804722 Arabidopsis thaliana
AT2G25355 1.0kb downstream 1.0kb downstream 1000 false Chr2: 10803723-10804722 Arabidopsis thaliana
AT2G25355 2.0kb upstream 2.0kb upstream 4445 true Chr2: 10799278-10803722 Arabidopsis thaliana
AT2G25355 2.0kb upstream 2.0kb upstream 2000 false Chr2: 10799278-10801277 Arabidopsis thaliana
AT2G25355 2.0kb downstream 2.0kb downstream 4445 true Chr2: 10801278-10805722 Arabidopsis thaliana
AT2G25355 2.0kb downstream 2.0kb downstream 2000 false Chr2: 10803723-10805722 Arabidopsis thaliana
AT2G25355 5.0kb upstream 5.0kb upstream 7445 true Chr2: 10796278-10803722 Arabidopsis thaliana
AT2G25355 5.0kb upstream 5.0kb upstream 5000 false Chr2: 10796278-10801277 Arabidopsis thaliana
AT2G25355 5.0kb downstream 5.0kb downstream 7445 true Chr2: 10801278-10808722 Arabidopsis thaliana
AT2G25355 5.0kb downstream 5.0kb downstream 5000 false Chr2: 10803723-10808722 Arabidopsis thaliana
AT2G25355 10.0kb upstream 10.0kb upstream 12445 true Chr2: 10791278-10803722 Arabidopsis thaliana
AT2G25355 10.0kb upstream 10.0kb upstream 10000 false Chr2: 10791278-10801277 Arabidopsis thaliana
AT2G25355 10.0kb downstream 10.0kb downstream 12445 true Chr2: 10801278-10813722 Arabidopsis thaliana
AT2G25355 10.0kb downstream 10.0kb downstream 10000 false Chr2: 10803723-10813722 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380921 5261 Brassicaceae View MSA
123829333 5264 Brassicales-Malvales View MSA
124338921 5266 SBM View MSA
124252694 5268 Malvidae View MSA
124061201 5270 Rosid View MSA
123736741 5271 Pentapetalae View MSA
122789639 5272 Eudicot View MSA
122045630 5273 Angiosperm View MSA
121344862 5274 Embryophyte View MSA
123428759 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.787        
cufflinks 1.829        
cufflinks 1.073       Low
cufflinks 1.666        
cufflinks 1.045       Low
cufflinks 1.988        

0 Strain