Gene : AT2G24420 A. thaliana TAIR10
Defline:  (1 of 8) KOG1003 - Actin filament-coating protein tropomyosin Genomic Order:  1706
Name:  ? AT2G24420 Secondary Identifier:  ? PAC:19638296
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G24420 0.5kb upstream 0.5kb upstream 3880 true Chr2: 10379526-10383405 Arabidopsis thaliana
AT2G24420 0.5kb upstream 0.5kb upstream 500 false Chr2: 10379526-10380025 Arabidopsis thaliana
AT2G24420 0.5kb downstream 0.5kb downstream 3880 true Chr2: 10380026-10383905 Arabidopsis thaliana
AT2G24420 0.5kb downstream 0.5kb downstream 500 false Chr2: 10383406-10383905 Arabidopsis thaliana
AT2G24420 1.0kb upstream 1.0kb upstream 4380 true Chr2: 10379026-10383405 Arabidopsis thaliana
AT2G24420 1.0kb upstream 1.0kb upstream 1000 false Chr2: 10379026-10380025 Arabidopsis thaliana
AT2G24420 1.0kb downstream 1.0kb downstream 4380 true Chr2: 10380026-10384405 Arabidopsis thaliana
AT2G24420 1.0kb downstream 1.0kb downstream 1000 false Chr2: 10383406-10384405 Arabidopsis thaliana
AT2G24420 2.0kb upstream 2.0kb upstream 5380 true Chr2: 10378026-10383405 Arabidopsis thaliana
AT2G24420 2.0kb upstream 2.0kb upstream 2000 false Chr2: 10378026-10380025 Arabidopsis thaliana
AT2G24420 2.0kb downstream 2.0kb downstream 5380 true Chr2: 10380026-10385405 Arabidopsis thaliana
AT2G24420 2.0kb downstream 2.0kb downstream 2000 false Chr2: 10383406-10385405 Arabidopsis thaliana
AT2G24420 5.0kb upstream 5.0kb upstream 8380 true Chr2: 10375026-10383405 Arabidopsis thaliana
AT2G24420 5.0kb upstream 5.0kb upstream 5000 false Chr2: 10375026-10380025 Arabidopsis thaliana
AT2G24420 5.0kb downstream 5.0kb downstream 8380 true Chr2: 10380026-10388405 Arabidopsis thaliana
AT2G24420 5.0kb downstream 5.0kb downstream 5000 false Chr2: 10383406-10388405 Arabidopsis thaliana
AT2G24420 10.0kb upstream 10.0kb upstream 13380 true Chr2: 10370026-10383405 Arabidopsis thaliana
AT2G24420 10.0kb upstream 10.0kb upstream 10000 false Chr2: 10370026-10380025 Arabidopsis thaliana
AT2G24420 10.0kb downstream 10.0kb downstream 13380 true Chr2: 10380026-10393405 Arabidopsis thaliana
AT2G24420 10.0kb downstream 10.0kb downstream 10000 false Chr2: 10383406-10393405 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375034 5261 Brassicaceae View MSA
123841259 5264 Brassicales-Malvales View MSA
124343342 5266 SBM View MSA
124241292 5268 Malvidae View MSA
124066395 5270 Rosid View MSA
123740440 5271 Pentapetalae View MSA
122788367 5272 Eudicot View MSA
122044616 5273 Angiosperm View MSA
121349321 5274 Embryophyte View MSA
123381277 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.42       High
cufflinks 12.712        
cufflinks 15.13        
cufflinks 11.935        
cufflinks 15.277        
cufflinks 10.292       Low

0 Strain