Gene : VAR2 A. thaliana TAIR10
Primary Identifier:  ? AT2G30950 Defline:  (1 of 2) PTHR23076//PTHR23076:SF60 - METALLOPROTEASE M41 FTSH // SUBFAMILY NOT NAMED
Genomic Order:  2391 Name:  ? AT2G30950
Secondary Identifier:  ? PAC:19641304
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G30950 0.5kb upstream 0.5kb upstream 3403 true Chr2: 13173821-13177223 Arabidopsis thaliana
AT2G30950 0.5kb upstream 0.5kb upstream 500 false Chr2: 13173821-13174320 Arabidopsis thaliana
AT2G30950 0.5kb downstream 0.5kb downstream 3403 true Chr2: 13174321-13177723 Arabidopsis thaliana
AT2G30950 0.5kb downstream 0.5kb downstream 500 false Chr2: 13177224-13177723 Arabidopsis thaliana
AT2G30950 1.0kb upstream 1.0kb upstream 3903 true Chr2: 13173321-13177223 Arabidopsis thaliana
AT2G30950 1.0kb upstream 1.0kb upstream 1000 false Chr2: 13173321-13174320 Arabidopsis thaliana
AT2G30950 1.0kb downstream 1.0kb downstream 3903 true Chr2: 13174321-13178223 Arabidopsis thaliana
AT2G30950 1.0kb downstream 1.0kb downstream 1000 false Chr2: 13177224-13178223 Arabidopsis thaliana
AT2G30950 2.0kb upstream 2.0kb upstream 4903 true Chr2: 13172321-13177223 Arabidopsis thaliana
AT2G30950 2.0kb upstream 2.0kb upstream 2000 false Chr2: 13172321-13174320 Arabidopsis thaliana
AT2G30950 2.0kb downstream 2.0kb downstream 4903 true Chr2: 13174321-13179223 Arabidopsis thaliana
AT2G30950 2.0kb downstream 2.0kb downstream 2000 false Chr2: 13177224-13179223 Arabidopsis thaliana
AT2G30950 5.0kb upstream 5.0kb upstream 7903 true Chr2: 13169321-13177223 Arabidopsis thaliana
AT2G30950 5.0kb upstream 5.0kb upstream 5000 false Chr2: 13169321-13174320 Arabidopsis thaliana
AT2G30950 5.0kb downstream 5.0kb downstream 7903 true Chr2: 13174321-13182223 Arabidopsis thaliana
AT2G30950 5.0kb downstream 5.0kb downstream 5000 false Chr2: 13177224-13182223 Arabidopsis thaliana
AT2G30950 10.0kb upstream 10.0kb upstream 12903 true Chr2: 13164321-13177223 Arabidopsis thaliana
AT2G30950 10.0kb upstream 10.0kb upstream 10000 false Chr2: 13164321-13174320 Arabidopsis thaliana
AT2G30950 10.0kb downstream 10.0kb downstream 12903 true Chr2: 13174321-13187223 Arabidopsis thaliana
AT2G30950 10.0kb downstream 10.0kb downstream 10000 false Chr2: 13177224-13187223 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374340 5261 Brassicaceae View MSA
123839956 5264 Brassicales-Malvales View MSA
124341395 5266 SBM View MSA
124239029 5268 Malvidae View MSA
124067047 5270 Rosid View MSA
123736542 5271 Pentapetalae View MSA
122790199 5272 Eudicot View MSA
122046550 5273 Angiosperm View MSA
121351325 5274 Embryophyte View MSA
123426403 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 262.069     High  
cufflinks 12.117        
cufflinks 309.018     High  
cufflinks 13.557        
cufflinks 325.32     High  
cufflinks 11.04        

0 Strain