Gene : AT2G30933 A. thaliana TAIR10
Defline:  (1 of 2) PTHR32227//PTHR32227:SF127 - FAMILY NOT NAMED // CARBOHYDRATE-BINDING X8 DOMAIN-CONTAINING PROTEIN Genomic Order:  2388
Name:  ? AT2G30933 Secondary Identifier:  ? PAC:19638222
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G30933 0.5kb upstream 0.5kb upstream 3168 true Chr2: 13164059-13167226 Arabidopsis thaliana
AT2G30933 0.5kb upstream 0.5kb upstream 500 false Chr2: 13166727-13167226 Arabidopsis thaliana
AT2G30933 0.5kb downstream 0.5kb downstream 3168 true Chr2: 13163559-13166726 Arabidopsis thaliana
AT2G30933 0.5kb downstream 0.5kb downstream 500 false Chr2: 13163559-13164058 Arabidopsis thaliana
AT2G30933 1.0kb upstream 1.0kb upstream 3668 true Chr2: 13164059-13167726 Arabidopsis thaliana
AT2G30933 1.0kb upstream 1.0kb upstream 1000 false Chr2: 13166727-13167726 Arabidopsis thaliana
AT2G30933 1.0kb downstream 1.0kb downstream 3668 true Chr2: 13163059-13166726 Arabidopsis thaliana
AT2G30933 1.0kb downstream 1.0kb downstream 1000 false Chr2: 13163059-13164058 Arabidopsis thaliana
AT2G30933 2.0kb upstream 2.0kb upstream 4668 true Chr2: 13164059-13168726 Arabidopsis thaliana
AT2G30933 2.0kb upstream 2.0kb upstream 2000 false Chr2: 13166727-13168726 Arabidopsis thaliana
AT2G30933 2.0kb downstream 2.0kb downstream 4668 true Chr2: 13162059-13166726 Arabidopsis thaliana
AT2G30933 2.0kb downstream 2.0kb downstream 2000 false Chr2: 13162059-13164058 Arabidopsis thaliana
AT2G30933 5.0kb upstream 5.0kb upstream 7668 true Chr2: 13164059-13171726 Arabidopsis thaliana
AT2G30933 5.0kb upstream 5.0kb upstream 5000 false Chr2: 13166727-13171726 Arabidopsis thaliana
AT2G30933 5.0kb downstream 5.0kb downstream 7668 true Chr2: 13159059-13166726 Arabidopsis thaliana
AT2G30933 5.0kb downstream 5.0kb downstream 5000 false Chr2: 13159059-13164058 Arabidopsis thaliana
AT2G30933 10.0kb upstream 10.0kb upstream 12668 true Chr2: 13164059-13176726 Arabidopsis thaliana
AT2G30933 10.0kb upstream 10.0kb upstream 10000 false Chr2: 13166727-13176726 Arabidopsis thaliana
AT2G30933 10.0kb downstream 10.0kb downstream 12668 true Chr2: 13154059-13166726 Arabidopsis thaliana
AT2G30933 10.0kb downstream 10.0kb downstream 10000 false Chr2: 13154059-13164058 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372134 5261 Brassicaceae View MSA
123832009 5264 Brassicales-Malvales View MSA
124341798 5266 SBM View MSA
124239526 5268 Malvidae View MSA
124061079 5270 Rosid View MSA
123753343 5271 Pentapetalae View MSA
122794093 5272 Eudicot View MSA
122050272 5273 Angiosperm View MSA
123429175 5275 Viridiplantae View MSA
121349342 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.243     Low  
cufflinks 2.068        
cufflinks 0.165     Low Low
cufflinks 2.744       High
cufflinks 0.183     Low  
cufflinks 1.839        

0 Strain