Gene : AT2G30600 A. thaliana TAIR10
Defline:  (1 of 1) PTHR24413:SF79 - BTB/POZ DOMAIN-CONTAINING PROTEIN 9 Genomic Order:  2353
Name:  ? AT2G30600 Secondary Identifier:  ? PAC:19641693
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G30600 0.5kb upstream 0.5kb upstream 5309 true Chr2: 13036376-13041684 Arabidopsis thaliana
AT2G30600 0.5kb upstream 0.5kb upstream 500 false Chr2: 13036376-13036875 Arabidopsis thaliana
AT2G30600 0.5kb downstream 0.5kb downstream 5309 true Chr2: 13036876-13042184 Arabidopsis thaliana
AT2G30600 0.5kb downstream 0.5kb downstream 500 false Chr2: 13041685-13042184 Arabidopsis thaliana
AT2G30600 1.0kb upstream 1.0kb upstream 5809 true Chr2: 13035876-13041684 Arabidopsis thaliana
AT2G30600 1.0kb upstream 1.0kb upstream 1000 false Chr2: 13035876-13036875 Arabidopsis thaliana
AT2G30600 1.0kb downstream 1.0kb downstream 5809 true Chr2: 13036876-13042684 Arabidopsis thaliana
AT2G30600 1.0kb downstream 1.0kb downstream 1000 false Chr2: 13041685-13042684 Arabidopsis thaliana
AT2G30600 2.0kb upstream 2.0kb upstream 6809 true Chr2: 13034876-13041684 Arabidopsis thaliana
AT2G30600 2.0kb upstream 2.0kb upstream 2000 false Chr2: 13034876-13036875 Arabidopsis thaliana
AT2G30600 2.0kb downstream 2.0kb downstream 6809 true Chr2: 13036876-13043684 Arabidopsis thaliana
AT2G30600 2.0kb downstream 2.0kb downstream 2000 false Chr2: 13041685-13043684 Arabidopsis thaliana
AT2G30600 5.0kb upstream 5.0kb upstream 9809 true Chr2: 13031876-13041684 Arabidopsis thaliana
AT2G30600 5.0kb upstream 5.0kb upstream 5000 false Chr2: 13031876-13036875 Arabidopsis thaliana
AT2G30600 5.0kb downstream 5.0kb downstream 9809 true Chr2: 13036876-13046684 Arabidopsis thaliana
AT2G30600 5.0kb downstream 5.0kb downstream 5000 false Chr2: 13041685-13046684 Arabidopsis thaliana
AT2G30600 10.0kb upstream 10.0kb upstream 14809 true Chr2: 13026876-13041684 Arabidopsis thaliana
AT2G30600 10.0kb upstream 10.0kb upstream 10000 false Chr2: 13026876-13036875 Arabidopsis thaliana
AT2G30600 10.0kb downstream 10.0kb downstream 14809 true Chr2: 13036876-13051684 Arabidopsis thaliana
AT2G30600 10.0kb downstream 10.0kb downstream 10000 false Chr2: 13041685-13051684 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122329462 5261 Brassicaceae Singleton cluster - no MSA
123770767 5264 Brassicales-Malvales Singleton cluster - no MSA
124347067 5266 SBM View MSA
124240670 5268 Malvidae View MSA
124067145 5270 Rosid View MSA
123738329 5271 Pentapetalae View MSA
122792871 5272 Eudicot View MSA
122043154 5273 Angiosperm View MSA
121346237 5274 Embryophyte View MSA
123426134 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.917       Low
cufflinks 2.956        
cufflinks 4.983        
cufflinks 3.344        
cufflinks 8.319       High
cufflinks 2.381        

0 Strain