Gene : AT2G30540 A. thaliana TAIR10
Defline:  (1 of 4) PTHR10168//PTHR10168:SF57 - GLUTAREDOXIN // GLUTAREDOXIN-C13-RELATED Genomic Order:  2346
Name:  ? AT2G30540 Secondary Identifier:  ? PAC:19641989
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana THIOREDOX-PWY Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G30540 0.5kb upstream 0.5kb upstream 1180 true Chr2: 13011105-13012284 Arabidopsis thaliana
AT2G30540 0.5kb upstream 0.5kb upstream 500 false Chr2: 13011785-13012284 Arabidopsis thaliana
AT2G30540 0.5kb downstream 0.5kb downstream 1180 true Chr2: 13010605-13011784 Arabidopsis thaliana
AT2G30540 0.5kb downstream 0.5kb downstream 500 false Chr2: 13010605-13011104 Arabidopsis thaliana
AT2G30540 1.0kb upstream 1.0kb upstream 1680 true Chr2: 13011105-13012784 Arabidopsis thaliana
AT2G30540 1.0kb upstream 1.0kb upstream 1000 false Chr2: 13011785-13012784 Arabidopsis thaliana
AT2G30540 1.0kb downstream 1.0kb downstream 1680 true Chr2: 13010105-13011784 Arabidopsis thaliana
AT2G30540 1.0kb downstream 1.0kb downstream 1000 false Chr2: 13010105-13011104 Arabidopsis thaliana
AT2G30540 2.0kb upstream 2.0kb upstream 2680 true Chr2: 13011105-13013784 Arabidopsis thaliana
AT2G30540 2.0kb upstream 2.0kb upstream 2000 false Chr2: 13011785-13013784 Arabidopsis thaliana
AT2G30540 2.0kb downstream 2.0kb downstream 2680 true Chr2: 13009105-13011784 Arabidopsis thaliana
AT2G30540 2.0kb downstream 2.0kb downstream 2000 false Chr2: 13009105-13011104 Arabidopsis thaliana
AT2G30540 5.0kb upstream 5.0kb upstream 5680 true Chr2: 13011105-13016784 Arabidopsis thaliana
AT2G30540 5.0kb upstream 5.0kb upstream 5000 false Chr2: 13011785-13016784 Arabidopsis thaliana
AT2G30540 5.0kb downstream 5.0kb downstream 5680 true Chr2: 13006105-13011784 Arabidopsis thaliana
AT2G30540 5.0kb downstream 5.0kb downstream 5000 false Chr2: 13006105-13011104 Arabidopsis thaliana
AT2G30540 10.0kb upstream 10.0kb upstream 10680 true Chr2: 13011105-13021784 Arabidopsis thaliana
AT2G30540 10.0kb upstream 10.0kb upstream 10000 false Chr2: 13011785-13021784 Arabidopsis thaliana
AT2G30540 10.0kb downstream 10.0kb downstream 10680 true Chr2: 13001105-13011784 Arabidopsis thaliana
AT2G30540 10.0kb downstream 10.0kb downstream 10000 false Chr2: 13001105-13011104 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028026 5273 Angiosperm View MSA
122378686 5261 Brassicaceae View MSA
123839290 5264 Brassicales-Malvales View MSA
124342010 5266 SBM View MSA
124253588 5268 Malvidae View MSA
124060957 5270 Rosid View MSA
123747538 5271 Pentapetalae View MSA
122788985 5272 Eudicot View MSA
121297578 5274 Embryophyte View MSA
123335620 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.621        
cufflinks 2.639        
cufflinks 6.921        
cufflinks 0.966       Low
cufflinks 6.949        
cufflinks 3.642        

0 Strain