Gene : PS2 A. thaliana TAIR10
Primary Identifier:  ? AT2G29900 Defline:  (1 of 2) K04505 - presenilin 1 (PSEN1, PS1)
Genomic Order:  2280 Name:  ? AT2G29900
Secondary Identifier:  ? PAC:19638424
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G29900 0.5kb upstream 0.5kb upstream 1880 true Chr2: 12749246-12751125 Arabidopsis thaliana
AT2G29900 0.5kb upstream 0.5kb upstream 500 false Chr2: 12749246-12749745 Arabidopsis thaliana
AT2G29900 0.5kb downstream 0.5kb downstream 1880 true Chr2: 12749746-12751625 Arabidopsis thaliana
AT2G29900 0.5kb downstream 0.5kb downstream 500 false Chr2: 12751126-12751625 Arabidopsis thaliana
AT2G29900 1.0kb upstream 1.0kb upstream 2380 true Chr2: 12748746-12751125 Arabidopsis thaliana
AT2G29900 1.0kb upstream 1.0kb upstream 1000 false Chr2: 12748746-12749745 Arabidopsis thaliana
AT2G29900 1.0kb downstream 1.0kb downstream 2380 true Chr2: 12749746-12752125 Arabidopsis thaliana
AT2G29900 1.0kb downstream 1.0kb downstream 1000 false Chr2: 12751126-12752125 Arabidopsis thaliana
AT2G29900 2.0kb upstream 2.0kb upstream 3380 true Chr2: 12747746-12751125 Arabidopsis thaliana
AT2G29900 2.0kb upstream 2.0kb upstream 2000 false Chr2: 12747746-12749745 Arabidopsis thaliana
AT2G29900 2.0kb downstream 2.0kb downstream 3380 true Chr2: 12749746-12753125 Arabidopsis thaliana
AT2G29900 2.0kb downstream 2.0kb downstream 2000 false Chr2: 12751126-12753125 Arabidopsis thaliana
AT2G29900 5.0kb upstream 5.0kb upstream 6380 true Chr2: 12744746-12751125 Arabidopsis thaliana
AT2G29900 5.0kb upstream 5.0kb upstream 5000 false Chr2: 12744746-12749745 Arabidopsis thaliana
AT2G29900 5.0kb downstream 5.0kb downstream 6380 true Chr2: 12749746-12756125 Arabidopsis thaliana
AT2G29900 5.0kb downstream 5.0kb downstream 5000 false Chr2: 12751126-12756125 Arabidopsis thaliana
AT2G29900 10.0kb upstream 10.0kb upstream 11380 true Chr2: 12739746-12751125 Arabidopsis thaliana
AT2G29900 10.0kb upstream 10.0kb upstream 10000 false Chr2: 12739746-12749745 Arabidopsis thaliana
AT2G29900 10.0kb downstream 10.0kb downstream 11380 true Chr2: 12749746-12761125 Arabidopsis thaliana
AT2G29900 10.0kb downstream 10.0kb downstream 10000 false Chr2: 12751126-12761125 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366816 5261 Brassicaceae View MSA
123829143 5264 Brassicales-Malvales View MSA
124321576 5266 SBM View MSA
124239111 5268 Malvidae View MSA
124063592 5270 Rosid View MSA
123748546 5271 Pentapetalae View MSA
122790840 5272 Eudicot View MSA
122049657 5273 Angiosperm View MSA
121347498 5274 Embryophyte View MSA
123424512 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.595       High
cufflinks 6.893        
cufflinks 5.83        
cufflinks 8.191        
cufflinks 5.368       Low
cufflinks 8.489        

0 Strain