Gene : AtIPCS3 A. thaliana TAIR10
Primary Identifier:  ? AT2G29525 Defline:  (1 of 3) PTHR21290//PTHR21290:SF29 - SPHINGOMYELIN SYNTHETASE // SUBFAMILY NOT NAMED
Genomic Order:  2239 Name:  ? AT2G29525
Secondary Identifier:  ? PAC:19641246
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G29525 0.5kb upstream 0.5kb upstream 2987 true Chr2: 12637834-12640820 Arabidopsis thaliana
AT2G29525 0.5kb upstream 0.5kb upstream 500 false Chr2: 12637834-12638333 Arabidopsis thaliana
AT2G29525 0.5kb downstream 0.5kb downstream 2987 true Chr2: 12638334-12641320 Arabidopsis thaliana
AT2G29525 0.5kb downstream 0.5kb downstream 500 false Chr2: 12640821-12641320 Arabidopsis thaliana
AT2G29525 1.0kb upstream 1.0kb upstream 3487 true Chr2: 12637334-12640820 Arabidopsis thaliana
AT2G29525 1.0kb upstream 1.0kb upstream 1000 false Chr2: 12637334-12638333 Arabidopsis thaliana
AT2G29525 1.0kb downstream 1.0kb downstream 3487 true Chr2: 12638334-12641820 Arabidopsis thaliana
AT2G29525 1.0kb downstream 1.0kb downstream 1000 false Chr2: 12640821-12641820 Arabidopsis thaliana
AT2G29525 2.0kb upstream 2.0kb upstream 4487 true Chr2: 12636334-12640820 Arabidopsis thaliana
AT2G29525 2.0kb upstream 2.0kb upstream 2000 false Chr2: 12636334-12638333 Arabidopsis thaliana
AT2G29525 2.0kb downstream 2.0kb downstream 4487 true Chr2: 12638334-12642820 Arabidopsis thaliana
AT2G29525 2.0kb downstream 2.0kb downstream 2000 false Chr2: 12640821-12642820 Arabidopsis thaliana
AT2G29525 5.0kb upstream 5.0kb upstream 7487 true Chr2: 12633334-12640820 Arabidopsis thaliana
AT2G29525 5.0kb upstream 5.0kb upstream 5000 false Chr2: 12633334-12638333 Arabidopsis thaliana
AT2G29525 5.0kb downstream 5.0kb downstream 7487 true Chr2: 12638334-12645820 Arabidopsis thaliana
AT2G29525 5.0kb downstream 5.0kb downstream 5000 false Chr2: 12640821-12645820 Arabidopsis thaliana
AT2G29525 10.0kb upstream 10.0kb upstream 12487 true Chr2: 12628334-12640820 Arabidopsis thaliana
AT2G29525 10.0kb upstream 10.0kb upstream 10000 false Chr2: 12628334-12638333 Arabidopsis thaliana
AT2G29525 10.0kb downstream 10.0kb downstream 12487 true Chr2: 12638334-12650820 Arabidopsis thaliana
AT2G29525 10.0kb downstream 10.0kb downstream 10000 false Chr2: 12640821-12650820 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375817 5261 Brassicaceae View MSA
123838533 5264 Brassicales-Malvales View MSA
124344275 5266 SBM View MSA
124243094 5268 Malvidae View MSA
124064547 5270 Rosid View MSA
123744784 5271 Pentapetalae View MSA
122788943 5272 Eudicot View MSA
122046269 5273 Angiosperm View MSA
121346433 5274 Embryophyte View MSA
123427335 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.941       Low
cufflinks 2.789       High
cufflinks 1.069        
cufflinks 2.678       High
cufflinks 1.192        
cufflinks 1.765        

0 Strain