Gene : CSD2 A. thaliana TAIR10
Primary Identifier:  ? AT2G28190 Defline:  (1 of 1) PTHR10003//PTHR10003:SF34 - SUPEROXIDE DISMUTASE CU-ZN -RELATED // SUPEROXIDE DISMUTASE [CU-ZN] 2, CHLOROPLASTIC
Genomic Order:  2104 Name:  ? AT2G28190
Secondary Identifier:  ? PAC:19643497
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana DETOX1-PWY Arabidopsis thaliana pathologic  
Athaliana DETOX1-PWY-1 Arabidopsis thaliana pathologic  
Athaliana PWY-6854 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G28190 0.5kb upstream 0.5kb upstream 2572 true Chr2: 12013998-12016569 Arabidopsis thaliana
AT2G28190 0.5kb upstream 0.5kb upstream 500 false Chr2: 12013998-12014497 Arabidopsis thaliana
AT2G28190 0.5kb downstream 0.5kb downstream 2572 true Chr2: 12014498-12017069 Arabidopsis thaliana
AT2G28190 0.5kb downstream 0.5kb downstream 500 false Chr2: 12016570-12017069 Arabidopsis thaliana
AT2G28190 1.0kb upstream 1.0kb upstream 3072 true Chr2: 12013498-12016569 Arabidopsis thaliana
AT2G28190 1.0kb upstream 1.0kb upstream 1000 false Chr2: 12013498-12014497 Arabidopsis thaliana
AT2G28190 1.0kb downstream 1.0kb downstream 3072 true Chr2: 12014498-12017569 Arabidopsis thaliana
AT2G28190 1.0kb downstream 1.0kb downstream 1000 false Chr2: 12016570-12017569 Arabidopsis thaliana
AT2G28190 2.0kb upstream 2.0kb upstream 4072 true Chr2: 12012498-12016569 Arabidopsis thaliana
AT2G28190 2.0kb upstream 2.0kb upstream 2000 false Chr2: 12012498-12014497 Arabidopsis thaliana
AT2G28190 2.0kb downstream 2.0kb downstream 4072 true Chr2: 12014498-12018569 Arabidopsis thaliana
AT2G28190 2.0kb downstream 2.0kb downstream 2000 false Chr2: 12016570-12018569 Arabidopsis thaliana
AT2G28190 5.0kb upstream 5.0kb upstream 7072 true Chr2: 12009498-12016569 Arabidopsis thaliana
AT2G28190 5.0kb upstream 5.0kb upstream 5000 false Chr2: 12009498-12014497 Arabidopsis thaliana
AT2G28190 5.0kb downstream 5.0kb downstream 7072 true Chr2: 12014498-12021569 Arabidopsis thaliana
AT2G28190 5.0kb downstream 5.0kb downstream 5000 false Chr2: 12016570-12021569 Arabidopsis thaliana
AT2G28190 10.0kb upstream 10.0kb upstream 12072 true Chr2: 12004498-12016569 Arabidopsis thaliana
AT2G28190 10.0kb upstream 10.0kb upstream 10000 false Chr2: 12004498-12014497 Arabidopsis thaliana
AT2G28190 10.0kb downstream 10.0kb downstream 12072 true Chr2: 12014498-12026569 Arabidopsis thaliana
AT2G28190 10.0kb downstream 10.0kb downstream 10000 false Chr2: 12016570-12026569 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375601 5261 Brassicaceae View MSA
123837251 5264 Brassicales-Malvales View MSA
124340795 5266 SBM View MSA
124253159 5268 Malvidae View MSA
124067425 5270 Rosid View MSA
123737273 5271 Pentapetalae View MSA
122788875 5272 Eudicot View MSA
122047736 5273 Angiosperm View MSA
121347419 5274 Embryophyte View MSA
123427939 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 118.151     High High
cufflinks 22.499       Low
cufflinks 92.446     High  
cufflinks 27.822        
cufflinks 68.063     High  
cufflinks 43.269     High  

0 Strain