Gene : CPN60A A. thaliana TAIR10
Primary Identifier:  ? AT2G28000 Defline:  (1 of 1) PTHR11353:SF11 - CHAPERONIN 60 SUBUNIT ALPHA 1, CHLOROPLASTIC
Genomic Order:  2083 Name:  ? AT2G28000
Secondary Identifier:  ? PAC:19641353
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Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G28000 0.5kb upstream 0.5kb upstream 3441 true Chr2: 11925949-11929389 Arabidopsis thaliana
AT2G28000 0.5kb upstream 0.5kb upstream 500 false Chr2: 11925949-11926448 Arabidopsis thaliana
AT2G28000 0.5kb downstream 0.5kb downstream 3441 true Chr2: 11926449-11929889 Arabidopsis thaliana
AT2G28000 0.5kb downstream 0.5kb downstream 500 false Chr2: 11929390-11929889 Arabidopsis thaliana
AT2G28000 1.0kb upstream 1.0kb upstream 3941 true Chr2: 11925449-11929389 Arabidopsis thaliana
AT2G28000 1.0kb upstream 1.0kb upstream 1000 false Chr2: 11925449-11926448 Arabidopsis thaliana
AT2G28000 1.0kb downstream 1.0kb downstream 3941 true Chr2: 11926449-11930389 Arabidopsis thaliana
AT2G28000 1.0kb downstream 1.0kb downstream 1000 false Chr2: 11929390-11930389 Arabidopsis thaliana
AT2G28000 2.0kb upstream 2.0kb upstream 4941 true Chr2: 11924449-11929389 Arabidopsis thaliana
AT2G28000 2.0kb upstream 2.0kb upstream 2000 false Chr2: 11924449-11926448 Arabidopsis thaliana
AT2G28000 2.0kb downstream 2.0kb downstream 4941 true Chr2: 11926449-11931389 Arabidopsis thaliana
AT2G28000 2.0kb downstream 2.0kb downstream 2000 false Chr2: 11929390-11931389 Arabidopsis thaliana
AT2G28000 5.0kb upstream 5.0kb upstream 7941 true Chr2: 11921449-11929389 Arabidopsis thaliana
AT2G28000 5.0kb upstream 5.0kb upstream 5000 false Chr2: 11921449-11926448 Arabidopsis thaliana
AT2G28000 5.0kb downstream 5.0kb downstream 7941 true Chr2: 11926449-11934389 Arabidopsis thaliana
AT2G28000 5.0kb downstream 5.0kb downstream 5000 false Chr2: 11929390-11934389 Arabidopsis thaliana
AT2G28000 10.0kb upstream 10.0kb upstream 12941 true Chr2: 11916449-11929389 Arabidopsis thaliana
AT2G28000 10.0kb upstream 10.0kb upstream 10000 false Chr2: 11916449-11926448 Arabidopsis thaliana
AT2G28000 10.0kb downstream 10.0kb downstream 12941 true Chr2: 11926449-11939389 Arabidopsis thaliana
AT2G28000 10.0kb downstream 10.0kb downstream 10000 false Chr2: 11929390-11939389 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372895 5261 Brassicaceae View MSA
123839119 5264 Brassicales-Malvales View MSA
124350208 5266 SBM View MSA
124249848 5268 Malvidae View MSA
124066772 5270 Rosid View MSA
123747305 5271 Pentapetalae View MSA
122795365 5272 Eudicot View MSA
122048196 5273 Angiosperm View MSA
121346372 5274 Embryophyte View MSA
123427883 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 192.265     High High
cufflinks 33.473     High Low
cufflinks 187.469     High High
cufflinks 40.123     High  
cufflinks 131.735     High  
cufflinks 40.38     High  

0 Strain