Gene : AT2G27980 A. thaliana TAIR10
Defline:  (1 of 2) PTHR24098:SF5 - ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN Genomic Order:  2081
Name:  ? AT2G27980 Secondary Identifier:  ? PAC:19638254
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G27980 0.5kb upstream 0.5kb upstream 6613 true Chr2: 11913629-11920241 Arabidopsis thaliana
AT2G27980 0.5kb upstream 0.5kb upstream 500 false Chr2: 11919742-11920241 Arabidopsis thaliana
AT2G27980 0.5kb downstream 0.5kb downstream 6613 true Chr2: 11913129-11919741 Arabidopsis thaliana
AT2G27980 0.5kb downstream 0.5kb downstream 500 false Chr2: 11913129-11913628 Arabidopsis thaliana
AT2G27980 1.0kb upstream 1.0kb upstream 7113 true Chr2: 11913629-11920741 Arabidopsis thaliana
AT2G27980 1.0kb upstream 1.0kb upstream 1000 false Chr2: 11919742-11920741 Arabidopsis thaliana
AT2G27980 1.0kb downstream 1.0kb downstream 7113 true Chr2: 11912629-11919741 Arabidopsis thaliana
AT2G27980 1.0kb downstream 1.0kb downstream 1000 false Chr2: 11912629-11913628 Arabidopsis thaliana
AT2G27980 2.0kb upstream 2.0kb upstream 8113 true Chr2: 11913629-11921741 Arabidopsis thaliana
AT2G27980 2.0kb upstream 2.0kb upstream 2000 false Chr2: 11919742-11921741 Arabidopsis thaliana
AT2G27980 2.0kb downstream 2.0kb downstream 8113 true Chr2: 11911629-11919741 Arabidopsis thaliana
AT2G27980 2.0kb downstream 2.0kb downstream 2000 false Chr2: 11911629-11913628 Arabidopsis thaliana
AT2G27980 5.0kb upstream 5.0kb upstream 11113 true Chr2: 11913629-11924741 Arabidopsis thaliana
AT2G27980 5.0kb upstream 5.0kb upstream 5000 false Chr2: 11919742-11924741 Arabidopsis thaliana
AT2G27980 5.0kb downstream 5.0kb downstream 11113 true Chr2: 11908629-11919741 Arabidopsis thaliana
AT2G27980 5.0kb downstream 5.0kb downstream 5000 false Chr2: 11908629-11913628 Arabidopsis thaliana
AT2G27980 10.0kb upstream 10.0kb upstream 16113 true Chr2: 11913629-11929741 Arabidopsis thaliana
AT2G27980 10.0kb upstream 10.0kb upstream 10000 false Chr2: 11919742-11929741 Arabidopsis thaliana
AT2G27980 10.0kb downstream 10.0kb downstream 16113 true Chr2: 11903629-11919741 Arabidopsis thaliana
AT2G27980 10.0kb downstream 10.0kb downstream 10000 false Chr2: 11903629-11913628 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368263 5261 Brassicaceae View MSA
123840297 5264 Brassicales-Malvales View MSA
124346480 5266 SBM View MSA
124247892 5268 Malvidae View MSA
124068240 5270 Rosid View MSA
123753640 5271 Pentapetalae View MSA
122796648 5272 Eudicot View MSA
122050898 5273 Angiosperm View MSA
121351041 5274 Embryophyte View MSA
123425735 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.691       Low
cufflinks 10.152        
cufflinks 9.803        
cufflinks 10.394       High
cufflinks 8.958        
cufflinks 8.809        

0 Strain