Gene : CKS1 A. thaliana TAIR10
Primary Identifier:  ? AT2G27960 Defline:  (1 of 2) K02219 - cyclin-dependent kinase regulatory subunit CKS1 (CKS1)
Genomic Order:  2079 Name:  ? AT2G27960
Secondary Identifier:  ? PAC:19638043
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G27960 0.5kb upstream 0.5kb upstream 1463 true Chr2: 11910723-11912185 Arabidopsis thaliana
AT2G27960 0.5kb upstream 0.5kb upstream 500 false Chr2: 11911686-11912185 Arabidopsis thaliana
AT2G27960 0.5kb downstream 0.5kb downstream 1463 true Chr2: 11910223-11911685 Arabidopsis thaliana
AT2G27960 0.5kb downstream 0.5kb downstream 500 false Chr2: 11910223-11910722 Arabidopsis thaliana
AT2G27960 1.0kb upstream 1.0kb upstream 1963 true Chr2: 11910723-11912685 Arabidopsis thaliana
AT2G27960 1.0kb upstream 1.0kb upstream 1000 false Chr2: 11911686-11912685 Arabidopsis thaliana
AT2G27960 1.0kb downstream 1.0kb downstream 1963 true Chr2: 11909723-11911685 Arabidopsis thaliana
AT2G27960 1.0kb downstream 1.0kb downstream 1000 false Chr2: 11909723-11910722 Arabidopsis thaliana
AT2G27960 2.0kb upstream 2.0kb upstream 2963 true Chr2: 11910723-11913685 Arabidopsis thaliana
AT2G27960 2.0kb upstream 2.0kb upstream 2000 false Chr2: 11911686-11913685 Arabidopsis thaliana
AT2G27960 2.0kb downstream 2.0kb downstream 2963 true Chr2: 11908723-11911685 Arabidopsis thaliana
AT2G27960 2.0kb downstream 2.0kb downstream 2000 false Chr2: 11908723-11910722 Arabidopsis thaliana
AT2G27960 5.0kb upstream 5.0kb upstream 5963 true Chr2: 11910723-11916685 Arabidopsis thaliana
AT2G27960 5.0kb upstream 5.0kb upstream 5000 false Chr2: 11911686-11916685 Arabidopsis thaliana
AT2G27960 5.0kb downstream 5.0kb downstream 5963 true Chr2: 11905723-11911685 Arabidopsis thaliana
AT2G27960 5.0kb downstream 5.0kb downstream 5000 false Chr2: 11905723-11910722 Arabidopsis thaliana
AT2G27960 10.0kb upstream 10.0kb upstream 10963 true Chr2: 11910723-11921685 Arabidopsis thaliana
AT2G27960 10.0kb upstream 10.0kb upstream 10000 false Chr2: 11911686-11921685 Arabidopsis thaliana
AT2G27960 10.0kb downstream 10.0kb downstream 10963 true Chr2: 11900723-11911685 Arabidopsis thaliana
AT2G27960 10.0kb downstream 10.0kb downstream 10000 false Chr2: 11900723-11910722 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360477 5261 Brassicaceae View MSA
123832081 5264 Brassicales-Malvales View MSA
124345549 5266 SBM View MSA
124251200 5268 Malvidae View MSA
124061080 5270 Rosid View MSA
123739192 5271 Pentapetalae View MSA
122791805 5272 Eudicot View MSA
122049124 5273 Angiosperm View MSA
121351366 5274 Embryophyte View MSA
123427674 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.371        
cufflinks 36.4     High High
cufflinks 26.756     High  
cufflinks 32.59     High  
cufflinks 22.177       Low
cufflinks 33.06     High  

0 Strain