Gene : AT2G27900 A. thaliana TAIR10
Defline:  (1 of 1) PTHR13258:SF0 - COILED-COIL DOMAIN-CONTAINING PROTEIN 132 Genomic Order:  2074
Name:  ? AT2G27900 Secondary Identifier:  ? PAC:19641029
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G27900 0.5kb upstream 0.5kb upstream 9084 true Chr2: 11876930-11886013 Arabidopsis thaliana
AT2G27900 0.5kb upstream 0.5kb upstream 500 false Chr2: 11876930-11877429 Arabidopsis thaliana
AT2G27900 0.5kb downstream 0.5kb downstream 9084 true Chr2: 11877430-11886513 Arabidopsis thaliana
AT2G27900 0.5kb downstream 0.5kb downstream 500 false Chr2: 11886014-11886513 Arabidopsis thaliana
AT2G27900 1.0kb upstream 1.0kb upstream 9584 true Chr2: 11876430-11886013 Arabidopsis thaliana
AT2G27900 1.0kb upstream 1.0kb upstream 1000 false Chr2: 11876430-11877429 Arabidopsis thaliana
AT2G27900 1.0kb downstream 1.0kb downstream 9584 true Chr2: 11877430-11887013 Arabidopsis thaliana
AT2G27900 1.0kb downstream 1.0kb downstream 1000 false Chr2: 11886014-11887013 Arabidopsis thaliana
AT2G27900 2.0kb upstream 2.0kb upstream 10584 true Chr2: 11875430-11886013 Arabidopsis thaliana
AT2G27900 2.0kb upstream 2.0kb upstream 2000 false Chr2: 11875430-11877429 Arabidopsis thaliana
AT2G27900 2.0kb downstream 2.0kb downstream 10584 true Chr2: 11877430-11888013 Arabidopsis thaliana
AT2G27900 2.0kb downstream 2.0kb downstream 2000 false Chr2: 11886014-11888013 Arabidopsis thaliana
AT2G27900 5.0kb upstream 5.0kb upstream 13584 true Chr2: 11872430-11886013 Arabidopsis thaliana
AT2G27900 5.0kb upstream 5.0kb upstream 5000 false Chr2: 11872430-11877429 Arabidopsis thaliana
AT2G27900 5.0kb downstream 5.0kb downstream 13584 true Chr2: 11877430-11891013 Arabidopsis thaliana
AT2G27900 5.0kb downstream 5.0kb downstream 5000 false Chr2: 11886014-11891013 Arabidopsis thaliana
AT2G27900 10.0kb upstream 10.0kb upstream 18584 true Chr2: 11867430-11886013 Arabidopsis thaliana
AT2G27900 10.0kb upstream 10.0kb upstream 10000 false Chr2: 11867430-11877429 Arabidopsis thaliana
AT2G27900 10.0kb downstream 10.0kb downstream 18584 true Chr2: 11877430-11896013 Arabidopsis thaliana
AT2G27900 10.0kb downstream 10.0kb downstream 10000 false Chr2: 11886014-11896013 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369034 5261 Brassicaceae View MSA
123834462 5264 Brassicales-Malvales View MSA
124336756 5266 SBM View MSA
124242650 5268 Malvidae View MSA
124064722 5270 Rosid View MSA
123746708 5271 Pentapetalae View MSA
122787335 5272 Eudicot View MSA
122045793 5273 Angiosperm View MSA
121345284 5274 Embryophyte View MSA
123426551 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.211        
cufflinks 5.622        
cufflinks 3.98       Low
cufflinks 6.142       High
cufflinks 4.702        
cufflinks 5.951        

0 Strain