Gene : HDT4 A. thaliana TAIR10
Primary Identifier:  ? AT2G27840 Defline:  (1 of 23) 3.5.1.98 - Histone deacetylase / HDAC
Genomic Order:  2071 Name:  ? AT2G27840
Secondary Identifier:  ? PAC:19639825
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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G27840 0.5kb upstream 0.5kb upstream 2393 true Chr2: 11861494-11863886 Arabidopsis thaliana
AT2G27840 0.5kb upstream 0.5kb upstream 500 false Chr2: 11861494-11861993 Arabidopsis thaliana
AT2G27840 0.5kb downstream 0.5kb downstream 2393 true Chr2: 11861994-11864386 Arabidopsis thaliana
AT2G27840 0.5kb downstream 0.5kb downstream 500 false Chr2: 11863887-11864386 Arabidopsis thaliana
AT2G27840 1.0kb upstream 1.0kb upstream 2893 true Chr2: 11860994-11863886 Arabidopsis thaliana
AT2G27840 1.0kb upstream 1.0kb upstream 1000 false Chr2: 11860994-11861993 Arabidopsis thaliana
AT2G27840 1.0kb downstream 1.0kb downstream 2893 true Chr2: 11861994-11864886 Arabidopsis thaliana
AT2G27840 1.0kb downstream 1.0kb downstream 1000 false Chr2: 11863887-11864886 Arabidopsis thaliana
AT2G27840 2.0kb upstream 2.0kb upstream 3893 true Chr2: 11859994-11863886 Arabidopsis thaliana
AT2G27840 2.0kb upstream 2.0kb upstream 2000 false Chr2: 11859994-11861993 Arabidopsis thaliana
AT2G27840 2.0kb downstream 2.0kb downstream 3893 true Chr2: 11861994-11865886 Arabidopsis thaliana
AT2G27840 2.0kb downstream 2.0kb downstream 2000 false Chr2: 11863887-11865886 Arabidopsis thaliana
AT2G27840 5.0kb upstream 5.0kb upstream 6893 true Chr2: 11856994-11863886 Arabidopsis thaliana
AT2G27840 5.0kb upstream 5.0kb upstream 5000 false Chr2: 11856994-11861993 Arabidopsis thaliana
AT2G27840 5.0kb downstream 5.0kb downstream 6893 true Chr2: 11861994-11868886 Arabidopsis thaliana
AT2G27840 5.0kb downstream 5.0kb downstream 5000 false Chr2: 11863887-11868886 Arabidopsis thaliana
AT2G27840 10.0kb upstream 10.0kb upstream 11893 true Chr2: 11851994-11863886 Arabidopsis thaliana
AT2G27840 10.0kb upstream 10.0kb upstream 10000 false Chr2: 11851994-11861993 Arabidopsis thaliana
AT2G27840 10.0kb downstream 10.0kb downstream 11893 true Chr2: 11861994-11873886 Arabidopsis thaliana
AT2G27840 10.0kb downstream 10.0kb downstream 10000 false Chr2: 11863887-11873886 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379917 5261 Brassicaceae View MSA
123802479 5264 Brassicales-Malvales View MSA
124299671 5266 SBM View MSA
124151019 5268 Malvidae View MSA
123876539 5270 Rosid View MSA
123460200 5271 Pentapetalae View MSA
122495578 5272 Eudicot View MSA
122051478 5273 Angiosperm View MSA
123428998 5275 Viridiplantae View MSA
121349885 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.155        
cufflinks 10.593        
cufflinks 5.509        
cufflinks 10.856        
cufflinks 3.74       Low
cufflinks 14.301       High

0 Strain